Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0219 and Atu0220 are separated by 34 nucleotidesAtu0220 and Atu0221 are separated by 167 nucleotidesAtu0221 and Atu0222 overlap by 4 nucleotidesAtu0222 and Atu0223 are separated by 133 nucleotides Atu0219: Atu0219 - components of type IV pilus, at 224,426 to 225,709 Atu0219 Atu0220: Atu0220 - components of type IV pilus, at 225,744 to 226,325 Atu0220 Atu0221: Atu0221 - component of type IV pilus, at 226,493 to 228,076 Atu0221 Atu0222: Atu0222 - components of type IV pilus, at 228,073 to 228,879 Atu0222 Atu0223: Atu0223 - components of type IV pilus, prepilin peptidase, at 229,013 to 229,525 Atu0223
Group Condition Atu0219 Atu0220 Atu0221 Atu0222 Atu0223
stress Erythromycin 12.5 ug/mL -0.4 -1.2 -0.3 -0.3 -0.3
carbon source D-Xylose (C) -0.6 -0.5 -0.5 -0.5 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -1.2 -0.1 -0.1 -0.1
stress R2A with Bacitracin 0.6 mM -0.4 -0.5 -0.3 -0.1 -0.4
carbon source Cellopentaose (C) -0.4 -0.3 -0.4 -0.3 -0.2
stress Erythromycin 12.5 ug/mL -0.4 -0.7 -0.3 -0.1 -0.0
carbon source Stachyose (C) -0.6 -0.7 -0.4 -0.1 +0.2
stress R2A with Nalidixic 0.02 mM -0.1 -0.8 -0.3 -0.1 -0.2
stress R2A with Bacitracin 0.6 mM -0.2 -0.8 -0.2 -0.3 -0.0
stress R2A with Vancomycin 0.009 mM +0.4 -5.3 +1.7 +1.4 +0.3
stress Erythromycin 6.25 ug/mL -0.0 -1.1 -0.1 -0.3 +0.2
stress Chloramphenicol 12.5 ug/mL +0.2 -0.9 -0.1 +0.2 -0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.6 +0.2 -0.5 +0.0
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 -1.0 +0.2 -0.2 -0.0
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.1 -0.9 -0.2 +0.0 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.7 -0.1 -0.3 +0.0
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.4 +0.5 -0.3 -0.5 -0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.3 +0.2 -0.4 -0.2
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.6 -0.1 -0.6 +0.9
stress R2A with tungstate 375 mM -0.4 +0.3 -0.1 +0.5 -0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.3 -0.1 -0.4 +0.6
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.3 +0.1 +0.4 -0.5 +0.2
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 -0.4 +0.1 +0.4 +0.1
nitrogen source DL-2-Aminobutyric (N) -0.2 -0.6 +0.4 +1.0 +0.2
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.3 +0.1 +0.2 +0.4
stress R2A with Vancomycin 0.009 mM +0.4 -3.5 +2.0 +1.6 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 -0.0 +0.2 +0.9 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.0 +0.3 +0.4 +0.4 +0.5
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.5 +0.1 +0.4 +0.4
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 +0.4 +0.2 +0.5 +0.4
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