Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0212 and Atu0213 are separated by 191 nucleotidesAtu0213 and Atu0214 are separated by 58 nucleotidesAtu0214 and Atu0215 are separated by 142 nucleotidesAtu0215 and Atu0216 are separated by 63 nucleotides Atu0212: Atu0212 - hypothetical protein, at 216,563 to 216,922 Atu0212 Atu0213: Atu0213 - nicotinate phosphoribosyltransferase, at 217,114 to 218,418 Atu0213 Atu0214: Atu0214 - leucine aminopeptidase, at 218,477 to 219,871 Atu0214 Atu0215: Atu0215 - hypothetical protein, at 220,014 to 220,838 Atu0215 Atu0216: Atu0216 - components of type IV pilus, at 220,902 to 221,888 Atu0216
Group Condition Atu0212 Atu0213 Atu0214 Atu0215 Atu0216
stress Erythromycin 12.5 ug/mL -1.2 -0.4 +0.2 -0.2 -0.3
stress Erythromycin 12.5 ug/mL -0.9 -0.3 -0.0 -0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -0.2 -0.4 -0.4 -0.1
stress Chloramphenicol 12.5 ug/mL -0.3 -0.2 -0.0 -0.5 -0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 -0.2 -0.1 -0.0 -0.6
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.4 -0.1 +0.0 +0.2
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.1 +0.2 +0.2 -0.1 -0.0
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.9 -0.4 +0.1 +0.1 +0.2
carbon source L-Sorbose (C) +0.3 -0.6 +0.2 -0.3 -0.2
stress R2A with m-arsenite 0.8 mM +0.4 -1.1 +0.1 -0.0 +0.1
carbon source alpha-Lactose (C) -0.3 +0.5 +0.0 -0.2 -0.4
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.1 +0.2 +0.3 -0.5
stress R2A with m-arsenite 0.8 mM +0.2 -0.8 +0.2 +0.1 +0.1
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.2 -0.3 +0.3 +0.3 -0.2
carbon source methyl-beta-D-xylopyranoside (C) +0.3 +0.3 -0.1 -0.2 -0.4
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days -0.4 -0.3 +0.4 +0.1 +0.1
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.2 +0.2 -0.1 +0.3
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.4 -0.2 +0.4 -0.1 +0.3
stress R2A with Vancomycin 0.009 mM -1.4 +0.2 -0.5 +1.3 +0.7
stress R2A with Nalidixic 0.02 mM +0.5 +0.1 -0.1 -0.4 +0.1
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.3 -0.1 +0.1 +0.5 +0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.3 +0.4 +0.5 -0.2
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.1 +0.4 +0.6 +0.1 -0.3
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.4 +0.1 +0.2 +0.5 +0.4
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.2 -0.2 +0.5 +0.3 +0.4
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.2 -0.2 +0.6 +0.4 -0.0
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 -0.0 +0.2 +0.4 -0.1
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.0 +0.5 +0.1 -0.1 +0.6
nitrogen source DL-2-Aminobutyric (N) +0.4 +0.6 +0.1 +0.2 +0.5
stress R2A with Vancomycin 0.009 mM -0.7 +0.4 -0.7 +1.8 +1.0
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