Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0193 and Atu0194 overlap by 26 nucleotidesAtu0194 and Atu0195 are separated by 99 nucleotidesAtu0195 and Atu0196 are separated by 105 nucleotidesAtu0196 and Atu0197 overlap by 4 nucleotides Atu0193: Atu0193 - glutamine synthetase, at 196,923 to 198,281 Atu0193 Atu0194: Atu0194 - oxidoreductase, at 198,256 to 199,584 Atu0194 Atu0195: Atu0195 - gluconokinase, at 199,684 to 200,175 Atu0195 Atu0196: Atu0196 - ABC transporter, membrane spanning protein (proline/glycine/betaine), at 200,281 to 201,021 Atu0196 Atu0197: Atu0197 - ABC transporter, nucleotide binding/ATPase protein (proline/glycine/betaine), at 201,018 to 201,956 Atu0197
Group Condition Atu0193 Atu0194 Atu0195 Atu0196 Atu0197
carbon source L-ascorbate (C) -0.1 -0.2 -5.9 -0.5 -0.6
carbon source L-ascorbate (C) +0.4 -0.3 -4.2 -0.3 -0.3
nitrogen source Putrescine (N) -1.1 -1.1 +0.1 -0.1 -0.1
nitrogen source Putrescine (N) -0.9 -0.9 -0.1 +0.0 -0.2
nitrogen source spermidine (N) -0.7 -1.0 +0.3 -0.0 -0.1
no phage P3L5 -0.4 +0.0 -0.5 -0.3 -0.3
nitrogen source spermidine (N) -0.6 -0.9 +0.1 +0.0 -0.1
carbon source 2-Keto-D-gluconic hemicalcium salt (C) +0.0 -0.1 -1.5 +0.0 +0.2
carbon source 2-Keto-D-gluconic hemicalcium salt (C) +0.3 -0.1 -1.7 +0.0 +0.1
phage AgroPhage_C04 -0.8 +0.1 +0.2 -0.5 +0.2
phage AgroPhage_F10 -0.7 +0.3 +0.5 -0.5 -0.2
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.2 -0.3 +0.6 +0.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.3 -0.2 +0.3 -0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 -0.4 -0.6 +0.1 -0.0
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 -0.0 -0.2 -0.5 -0.0
nitrogen source DL-2-Aminobutyric (N) -0.3 +0.7 -0.2 +0.3 -0.1
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.6 -0.2 +0.7 +0.2 +0.4
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +1.0 -0.2 -0.5 +0.2 +0.1
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.4 +0.3 -0.1 -0.3
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.8 +0.4 -0.0 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 -0.2 -0.0 +0.7 -0.1
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 -0.1 +0.5 -0.6 +0.3
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.3 +0.7 +0.1 +0.5 +0.3
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 +0.3 -0.1 -0.1 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.2 -0.1 -0.1 +0.1 +0.5
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 -0.2 -0.1 +0.6 +0.3
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 +0.4 +0.8 +0.3 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.2 +0.3 +0.2 +0.4 +0.1
carbon source gluconate (C) -0.0 -0.1 +2.9 -0.1 -0.1
carbon source gluconate (C) +0.1 +0.2 +2.7 -0.1 +0.3
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