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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0190 and Atu0193 are separated by 1523 nucleotides
Atu0193 and Atu0194 overlap by 26 nucleotides
Atu0194 and Atu0195 are separated by 99 nucleotides
Atu0195 and Atu0196 are separated by 105 nucleotides
Atu0190: Atu0190 - ABC transporter, nucleotide binding/ATPase protein (peptide), at 193,759 to 195,399
Atu0190
Atu0193: Atu0193 - glutamine synthetase, at 196,923 to 198,281
Atu0193
Atu0194: Atu0194 - oxidoreductase, at 198,256 to 199,584
Atu0194
Atu0195: Atu0195 - gluconokinase, at 199,684 to 200,175
Atu0195
Atu0196: Atu0196 - ABC transporter, membrane spanning protein (proline/glycine/betaine), at 200,281 to 201,021
Atu0196
Group
Condition
Atu0190
Atu0193
Atu0194
Atu0195
Atu0196
carbon source
L-ascorbate (C)
-1.3
-0.1
-0.2
-5.9
-0.5
stress
R2A with Azlocillin 0.2 mM
-6.3
-0.2
+0.1
+0.0
+0.1
stress
R2A with Azlocillin 0.2 mM
-5.8
+0.0
+0.1
+0.0
-0.3
carbon source
L-ascorbate (C)
-1.5
+0.4
-0.3
-4.2
-0.3
stress
R2A with hypochlorite 6.25 mM
-4.3
+0.2
-0.0
-0.3
-0.2
lb_wheat
LB_wheat
-3.2
-0.4
-0.3
+0.1
-0.3
lb control
LB control
-3.7
-0.0
-0.2
+0.1
-0.1
lb_wheat
LB_wheat
-3.3
-0.4
-0.4
+0.3
-0.0
lb_maize
LB_Maize
-3.1
-0.0
-0.0
-0.1
-0.2
lb_maize
LB_Maize
-3.2
+0.1
-0.1
-0.1
+0.1
stress
R2A with m-arsenite 0.8 mM
-3.5
-0.1
+0.6
-0.1
-0.1
phage
Phage 95.2 + bacteria
-2.7
-0.0
-0.0
-0.3
-0.2
stress
R2A with Strontium chloride 750 mM
-2.8
-0.4
-0.0
+0.2
-0.1
lb control
LB control
-2.6
-0.2
-0.1
+0.1
-0.2
lb control
LB control
-2.7
-0.1
-0.2
+0.2
-0.0
phage
Phage 99.2 + bacteria
-2.6
-0.3
+0.1
-0.1
+0.1
phage
Phage 95.1 + bacteria
-2.5
-0.2
-0.1
-0.2
+0.2
stress
R2A with Chloride 700 mM
-3.2
+0.4
+0.1
-0.0
-0.0
phage
Phage 100.1 + bacteria
-2.5
-0.1
+0.1
-0.3
+0.1
stress
R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM
-2.4
-0.2
+0.2
-0.1
+0.3
phage
Phage 100.3 + bacteria
-2.4
-0.3
+0.1
-0.0
+0.3
stress
R2A with m-arsenite 0.8 mM
-3.1
+0.1
+0.6
-0.1
+0.4
lb_maize
LB_Maize
-2.5
-0.1
-0.1
+0.4
+0.1
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-1.6
-0.5
-0.2
-0.3
+0.6
agar plate interaction control
Parafilmed volatile agar plate with no fungus
-1.5
+1.2
+0.3
+0.2
+0.4
phage
AgroPhage_F10
+1.6
-0.7
+0.3
+0.5
-0.5
carbon source
gluconate (C)
-0.8
+0.1
+0.2
+2.7
-0.1
carbon source
gluconate (C)
-0.5
-0.0
-0.1
+2.9
-0.1
stress
R2A with Vancomycin 0.009 mM
+2.8
-0.0
+0.4
+0.0
-0.1
stress
R2A with Vancomycin 0.009 mM
+3.4
-0.4
+0.4
-0.2
+0.0
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