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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0189 and Atu0190 are separated by 5 nucleotides
Atu0190 and Atu0193 are separated by 1523 nucleotides
Atu0193 and Atu0194 overlap by 26 nucleotides
Atu0194 and Atu0195 are separated by 99 nucleotides
Atu0189: Atu0189 - ABC transporter, membrane spanning protein (peptide), at 192,608 to 193,753
Atu0189
Atu0190: Atu0190 - ABC transporter, nucleotide binding/ATPase protein (peptide), at 193,759 to 195,399
Atu0190
Atu0193: Atu0193 - glutamine synthetase, at 196,923 to 198,281
Atu0193
Atu0194: Atu0194 - oxidoreductase, at 198,256 to 199,584
Atu0194
Atu0195: Atu0195 - gluconokinase, at 199,684 to 200,175
Atu0195
Group
Condition
Atu0189
Atu0190
Atu0193
Atu0194
Atu0195
stress
R2A with Azlocillin 0.2 mM
-8.3
-6.3
-0.2
+0.1
+0.0
stress
R2A with Azlocillin 0.2 mM
-4.6
-5.8
+0.0
+0.1
+0.0
stress
R2A with hypochlorite 6.25 mM
-4.7
-4.3
+0.2
-0.0
-0.3
carbon source
L-ascorbate (C)
-1.5
-1.3
-0.1
-0.3
-5.9
lb_maize
LB_Maize
-5.0
-3.2
+0.1
-0.1
-0.1
lb_wheat
LB_wheat
-4.1
-3.2
-0.4
-0.3
+0.1
stress
R2A with m-arsenite 0.8 mM
-4.9
-3.5
-0.1
+0.6
-0.1
lb_maize
LB_Maize
-4.1
-3.1
-0.0
-0.0
-0.1
lb control
LB control
-4.3
-2.6
-0.2
-0.1
+0.1
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD0.075
-5.1
-1.3
-0.8
-0.1
+0.2
lb_wheat
LB_wheat
-3.2
-3.3
-0.4
-0.4
+0.3
lb control
LB control
-3.2
-3.7
-0.0
-0.2
+0.1
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-6.4
-1.7
+0.4
+0.1
+0.6
benthi_leaf_lb with c58c1od0.075
Benthi_leaf_C58C1OD0.075
-5.1
-1.6
-0.0
-0.1
-0.2
carbon source
L-ascorbate (C)
-1.1
-1.5
+0.4
-0.3
-4.2
phage
Phage 95.2 + bacteria
-3.0
-2.7
-0.0
-0.0
-0.3
stress
R2A with Gentamicin 0.00125 mM
-4.3
-2.3
+0.3
+0.1
+0.2
stress
R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM
-3.3
-2.8
+0.0
+0.0
+0.0
in planta
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-4.6
-1.8
-0.0
-0.1
+0.7
phage
Phage 95.1 + bacteria
-3.0
-2.6
-0.1
-0.0
-0.1
stress
R2A with Chloride 700 mM
-3.1
-3.2
+0.4
+0.1
-0.0
phage
Phage 100.3 + bacteria
-3.1
-2.5
+0.1
+0.0
-0.2
phage
Phage 95.1 + bacteria
-2.7
-2.5
-0.2
-0.1
-0.2
phage
Phage 95.3 + bacteria
-3.3
-2.0
-0.2
-0.0
+0.0
phage
Phage 100.1 + bacteria
-2.5
-2.3
-0.3
+0.0
-0.3
benthi_leaf_lb with c58c1od2.0
Benthi_leaf_C58C1OD2.0
-3.8
-1.3
-0.1
+0.0
+0.1
stress
R2A with Strontium chloride 750 mM
-2.0
-2.8
-0.4
-0.0
+0.2
stress
R2A with m-arsenite 0.8 mM
-2.2
-3.1
+0.1
+0.6
-0.1
stress
R2A with Vancomycin 0.009 mM
+2.7
+2.8
-0.0
+0.4
+0.0
stress
R2A with Vancomycin 0.009 mM
+3.5
+3.4
-0.4
+0.4
-0.2
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