Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0185 and Atu0186 are separated by 99 nucleotidesAtu0186 and Atu0187 are separated by 202 nucleotidesAtu0187 and Atu0188 are separated by 141 nucleotidesAtu0188 and Atu0189 overlap by 1 nucleotides Atu0185: Atu0185 - methylglyoxal synthase, at 187,787 to 188,170 Atu0185 Atu0186: Atu0186 - penicillin-insensitive murein endopeptidase, at 188,270 to 189,325 Atu0186 Atu0187: Atu0187 - ABC transporter, substrate binding protein (peptide), at 189,528 to 191,372 Atu0187 Atu0188: Atu0188 - ABC transporter, membrane spanning protein (peptide), at 191,514 to 192,608 Atu0188 Atu0189: Atu0189 - ABC transporter, membrane spanning protein (peptide), at 192,608 to 193,753 Atu0189
Group Condition Atu0185 Atu0186 Atu0187 Atu0188 Atu0189
stress R2A with Azlocillin 0.2 mM -1.5 +0.1 -0.1 -5.7 -8.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.0 -0.2 -0.1 -4.3 -6.4
stress R2A with Azlocillin 0.2 mM -0.4 +0.1 -0.0 -5.6 -4.6
stress R2A with m-arsenite 0.8 mM -2.3 -0.3 -0.1 -2.9 -4.9
lb_maize LB_Maize +0.1 -0.1 -0.1 -4.6 -5.0
stress R2A with hypochlorite 6.25 mM -0.9 -0.2 -0.1 -3.2 -4.7
stress R2A with Chloride 700 mM -0.6 -0.0 -0.3 -4.9 -3.1
carbon source Cellotetraose (C) -5.7 -0.0 +0.1 -1.3 -1.8
carbon source D-Trehalose (C) -6.5 -0.1 -0.2 -1.0 -0.8
lb control LB control +0.0 -0.2 -0.2 -3.8 -4.3
carbon source D-Trehalose (C) -5.4 -0.1 -0.2 -1.5 -0.8
stress R2A with Gentamicin 0.00125 mM -0.5 -0.0 -1.0 -2.0 -4.3
carbon source D-Maltose (C) -5.7 -0.3 -0.0 -0.6 -1.3
lb_maize LB_Maize -0.2 -0.1 -0.1 -2.9 -4.1
carbon source Cellotetraose (C) -4.3 -0.4 -0.1 -1.2 -1.3
carbon source D-Maltose (C) -4.4 -0.1 -0.1 -1.6 -0.9
carbon source Gentibiose (C) -4.9 -0.3 +0.0 -1.2 -0.7
lb_wheat LB_wheat +0.2 -0.1 -0.0 -2.9 -4.1
carbon source D-Cellobiose (C) -5.0 -0.1 +0.1 -0.8 -1.0
lb control LB control -0.2 -0.1 +0.1 -4.4 -2.1
carbon source Gentibiose (C) -4.0 -0.1 -0.0 -1.1 -1.5
stress R2A with m-arsenite 0.8 mM -1.7 +0.2 -0.0 -2.9 -2.2
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.1 -0.2 +0.1 -1.9 -4.6
benthi_leaf_lb with c58c1od0.075 Benthi_leaf_C58C1OD0.075 -0.2 -0.0 -0.1 -1.0 -5.1
phage Phage 95.2 + bacteria -0.2 +0.3 -0.1 -3.6 -2.7
stress R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM -0.5 +0.6 -0.1 -2.4 -3.3
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.4 +0.0 -0.1 -5.6 -0.4
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days +0.5 -0.1 -0.1 -2.9 -2.8
stress R2A with Vancomycin 0.009 mM -2.3 +0.8 +0.0 +1.9 +2.7
stress R2A with Vancomycin 0.009 mM -1.7 +1.1 +0.0 +3.8 +3.5
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