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Protein
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Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0185 and Atu0186 are separated by 99 nucleotides
Atu0186 and Atu0187 are separated by 202 nucleotides
Atu0187 and Atu0188 are separated by 141 nucleotides
Atu0188 and Atu0189 overlap by 1 nucleotides
Atu0185: Atu0185 - methylglyoxal synthase, at 187,787 to 188,170
Atu0185
Atu0186: Atu0186 - penicillin-insensitive murein endopeptidase, at 188,270 to 189,325
Atu0186
Atu0187: Atu0187 - ABC transporter, substrate binding protein (peptide), at 189,528 to 191,372
Atu0187
Atu0188: Atu0188 - ABC transporter, membrane spanning protein (peptide), at 191,514 to 192,608
Atu0188
Atu0189: Atu0189 - ABC transporter, membrane spanning protein (peptide), at 192,608 to 193,753
Atu0189
Group
Condition
Atu0185
Atu0186
Atu0187
Atu0188
Atu0189
stress
R2A with Azlocillin 0.2 mM
-1.5
+0.1
-0.1
-5.7
-8.3
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.0
-0.2
-0.1
-4.3
-6.4
stress
R2A with Azlocillin 0.2 mM
-0.4
+0.1
-0.0
-5.6
-4.6
stress
R2A with m-arsenite 0.8 mM
-2.3
-0.3
-0.1
-2.9
-4.9
lb_maize
LB_Maize
+0.1
-0.1
-0.1
-4.6
-5.0
stress
R2A with hypochlorite 6.25 mM
-0.9
-0.2
-0.1
-3.2
-4.7
stress
R2A with Chloride 700 mM
-0.6
-0.0
-0.3
-4.9
-3.1
carbon source
Cellotetraose (C)
-5.7
-0.0
+0.1
-1.3
-1.8
carbon source
D-Trehalose (C)
-6.5
-0.1
-0.2
-1.0
-0.8
lb control
LB control
+0.0
-0.2
-0.2
-3.8
-4.3
carbon source
D-Trehalose (C)
-5.4
-0.1
-0.2
-1.5
-0.8
stress
R2A with Gentamicin 0.00125 mM
-0.5
-0.0
-1.0
-2.0
-4.3
carbon source
D-Maltose (C)
-5.7
-0.3
-0.0
-0.6
-1.3
lb_maize
LB_Maize
-0.2
-0.1
-0.1
-2.9
-4.1
carbon source
Cellotetraose (C)
-4.3
-0.4
-0.1
-1.2
-1.3
carbon source
D-Maltose (C)
-4.4
-0.1
-0.1
-1.6
-0.9
carbon source
Gentibiose (C)
-4.9
-0.3
+0.0
-1.2
-0.7
lb_wheat
LB_wheat
+0.2
-0.1
-0.0
-2.9
-4.1
carbon source
D-Cellobiose (C)
-5.0
-0.1
+0.1
-0.8
-1.0
lb control
LB control
-0.2
-0.1
+0.1
-4.4
-2.1
carbon source
Gentibiose (C)
-4.0
-0.1
-0.0
-1.1
-1.5
stress
R2A with m-arsenite 0.8 mM
-1.7
+0.2
-0.0
-2.9
-2.2
in planta
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.1
-0.2
+0.1
-1.9
-4.6
benthi_leaf_lb with c58c1od0.075
Benthi_leaf_C58C1OD0.075
-0.2
-0.0
-0.1
-1.0
-5.1
phage
Phage 95.2 + bacteria
-0.2
+0.3
-0.1
-3.6
-2.7
stress
R2A with Ceftriaxone hemi(heptahydrate) 0.0005 mM
-0.5
+0.6
-0.1
-2.4
-3.3
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.4
+0.0
-0.1
-5.6
-0.4
in planta
Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.5
-0.1
-0.1
-2.9
-2.8
stress
R2A with Vancomycin 0.009 mM
-2.3
+0.8
+0.0
+1.9
+2.7
stress
R2A with Vancomycin 0.009 mM
-1.7
+1.1
+0.0
+3.8
+3.5
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