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Cofit
Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0159 and Atu0160 are separated by 34 nucleotides
Atu0160 and Atu0161 are separated by 265 nucleotides
Atu0161 and Atu0162 are separated by 6 nucleotides
Atu0162 and Atu0163 overlap by 4 nucleotides
Atu0159: Atu0159 - ABC transporter, nucleotide binding/ATPase protein, at 164,919 to 165,704
Atu0159
Atu0160: Atu0160 - transcriptional regulator, GntR family, at 165,739 to 166,476
Atu0160
Atu0161: Atu0161 - biopolymer transport protein, at 166,742 to 167,764
Atu0161
Atu0162: Atu0162 - biopolymer transport protein, at 167,771 to 168,274
Atu0162
Atu0163: Atu0163 - tonB protein, at 168,271 to 169,194
Atu0163
Group
Condition
Atu0159
Atu0160
Atu0161
Atu0162
Atu0163
no phage
P1L5
+0.0
-0.1
-3.4
-3.6
-5.0
in planta
Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
+0.2
-0.1
-4.0
-3.8
-3.8
no phage
P1L4
-0.2
+0.1
-3.6
-4.1
-3.6
no phage
P4L4
+0.1
+0.1
-3.3
-3.2
-4.6
in planta
Bethi_Library_OD0.01
-0.3
+0.1
-2.8
-3.9
-3.9
no phage
P3L4
-0.2
+0.1
-3.5
-4.0
-3.1
in planta
Bethi_Library_OD0.1
-0.2
-0.0
-4.0
-3.2
-3.3
in planta
Bethi_Library_OD0.01
-0.1
+0.1
-2.9
-4.0
-3.7
no phage
P3L5
-0.0
+0.1
-4.0
-3.0
-3.6
in planta
Bethi_Library_OD0.01
-0.0
-0.1
-3.6
-3.4
-3.1
no phage
P2L5
+0.1
+0.2
-4.1
-3.1
-3.3
no phage
P2L4
-0.0
+0.2
-3.6
-2.5
-4.0
stress
Pyrogallol 0.5 mM
+0.1
-0.1
-3.3
-3.4
-3.1
stress
Rosmarinic 5 mM
-0.1
-0.0
-3.2
-3.0
-3.3
no phage
P5L5
-0.2
+0.1
-3.0
-2.9
-3.5
in planta
Bethi_Library_OD0.05
-0.1
+0.4
-2.9
-3.0
-3.7
in planta
Bethi_Library_OD0.1
-0.2
-0.0
-2.8
-2.8
-2.9
in planta
Bethi_Library_OD1.0
-0.0
+0.1
-2.5
-3.2
-3.2
in planta
Bethi_Library_OD0.05
-0.2
+0.2
-2.7
-3.5
-2.5
stress
Rosmarinic 5 mM
-0.2
-0.2
-2.7
-2.8
-2.9
in planta
Bethi_Library_OD1.0
-0.2
+0.1
-2.7
-3.2
-2.6
in planta
Bethi_Library_OD0.1
-0.0
-0.1
-2.8
-2.7
-2.9
in planta
Bethi_Library_OD0.05
-0.2
-0.0
-2.3
-2.4
-3.3
in planta
Bethi_Library_OD1.0
-0.3
+0.0
-2.9
-2.5
-2.5
in planta
Bethi_Library_OD0.5
-0.1
-0.1
-2.7
-2.6
-2.7
in planta
Bethi_Library_OD0.01
-0.0
+0.1
-2.4
-2.7
-3.1
in planta
Bethi_Library_OD0.5
-0.1
+0.0
-2.4
-3.1
-2.6
in planta
Bethi_Library_OD0.05
-0.1
+0.2
-3.3
-2.0
-2.8
in planta
Bethi_Library_OD0.01
-0.2
+0.2
-2.6
-2.9
-2.5
stress
p-Coumaric 1.25 mM
-0.1
+0.1
-2.7
-2.7
-2.6
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