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Cofit
Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0149 and Atu0150 are separated by 6 nucleotides
Atu0150 and Atu0151 are separated by 75 nucleotides
Atu0151 and Atu0152 are separated by 70 nucleotides
Atu0152 and Atu0153 overlap by 11 nucleotides
Atu0149: Atu0149 - enoyl-(acyl-carrier-protein) reductase, at 157,461 to 158,267
Atu0149
Atu0150: Atu0150 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 158,274 to 159,497
Atu0150
Atu0151: Atu0151 - D-3-hydroxydecanoyl-(acyl carrier-protein) dehydratase, at 159,573 to 160,088
Atu0151
Atu0152: Atu0152 - hypothetical protein, at 160,159 to 160,416
Atu0152
Atu0153: Atu0153 - transcriptional regulator, Fur family, at 160,406 to 160,825
Atu0153
Group
Condition
Atu0149
Atu0150
Atu0151
Atu0152
Atu0153
no phage
P1L4
-0.2
N.D.
N.D.
-0.4
-4.6
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-1.3
N.D.
N.D.
-0.7
-3.1
in planta
Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-1.1
N.D.
N.D.
-0.8
-3.0
no phage
P3L4
-0.7
N.D.
N.D.
-0.2
-3.6
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-1.5
N.D.
N.D.
-0.6
-2.0
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-1.4
N.D.
N.D.
-1.0
-1.6
no phage
P2L4
-0.5
N.D.
N.D.
-0.5
-2.9
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-1.2
N.D.
N.D.
-1.3
-1.4
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.9
N.D.
N.D.
+0.3
-3.2
no phage
P3L5
-0.3
N.D.
N.D.
-0.7
-2.8
in planta
Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-1.3
N.D.
N.D.
-0.5
-1.8
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-1.3
N.D.
N.D.
-0.1
-2.1
no phage
P1L5
-0.3
N.D.
N.D.
+0.1
-3.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.8
N.D.
N.D.
-0.3
-2.3
no phage
P4L4
-0.1
N.D.
N.D.
+0.0
-3.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-1.5
N.D.
N.D.
+0.1
-1.8
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-1.5
N.D.
N.D.
+0.2
-1.9
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.6
N.D.
N.D.
-1.3
-2.4
no phage
P2L5
+0.8
N.D.
N.D.
-0.6
-2.8
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-1.6
N.D.
N.D.
+0.6
-1.6
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-1.3
N.D.
N.D.
+0.5
-1.7
in planta
Plant=Tomato; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.8
N.D.
N.D.
+0.4
-2.2
in planta
Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-1.2
N.D.
N.D.
+0.5
-1.8
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-1.0
N.D.
N.D.
+0.8
-2.3
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-1.1
N.D.
N.D.
+1.1
-2.4
in planta
Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-2.2
N.D.
N.D.
+0.8
-0.6
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-0.6
N.D.
N.D.
+1.0
-2.2
phage
AgroPhage_C04
+0.1
N.D.
N.D.
-2.6
+0.9
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-0.4
N.D.
N.D.
+1.2
-2.3
nitrogen source
DL-2-Aminobutyric (N)
+1.7
N.D.
N.D.
-1.2
-0.9
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