Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0107 and Atu0108 are separated by 220 nucleotidesAtu0108 and Atu0109 are separated by 164 nucleotidesAtu0109 and Atu8081 are separated by 277 nucleotidesAtu8081 and Atu0110 are separated by 91 nucleotides Atu0107: Atu0107 - hypothetical protein, at 110,062 to 110,223 Atu0107 Atu0108: Atu0108 - putative metalloprotease M20 family, at 110,444 to 111,835 Atu0108 Atu0109: Atu0109 - transcriptional regulator, MarR family, at 112,000 to 112,446 Atu0109 Atu8081: Atu8081 - hypothetical protein, at 112,724 to 113,134 Atu8081 Atu0110: Atu0110 - DNA polymerase I, at 113,226 to 116,222 Atu0110
Group Condition Atu0107 Atu0108 Atu0109 Atu8081 Atu0110
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -2.5 +0.0 -0.9 -0.1 N.D.
phage AgroPhage_D04 -1.9 -0.2 -0.9 -0.1 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.6 -0.3 -0.2 -0.1 N.D.
in planta Bethi_Library_OD0.5_6week -0.8 -0.2 -0.7 -0.1 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.1 +0.2 -0.9 +0.1 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.0 -0.0 -0.8 +0.2 N.D.
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -1.2 -0.0 -0.2 -0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.1 -0.0 -0.4 +0.2 N.D.
in planta Plant=Sorghum_Btx_642; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.4 -0.2 -1.0 -0.5 N.D.
phage AgroPhage_D10 -1.5 +0.2 +0.1 -0.0 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +1.0 -0.1 -1.5 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.1 -0.3 +0.5 +0.1 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.7 +0.1 -0.4 +0.6 N.D.
no phage P2L5 -1.0 +0.1 +0.4 +0.2 N.D.
Atjh14 +0.4 +0.2 -1.0 +0.1 N.D.
phage AgroPhage_F04 -1.2 +0.0 +1.0 +0.1 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 -0.1 -0.9 +0.6 N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.9 +0.0 -0.6 +0.4 N.D.
in planta Plant=Lettuce; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +1.2 -0.1 +0.1 -0.2 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.5 -0.4 +0.3 N.D.
stress R2A with Oxytetracycline 0.0002 mM +1.2 -0.1 -0.3 +0.1 N.D.
in planta Bethi_Library_OD1.0 +0.9 -0.2 +0.5 -0.3 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.5 -0.4 +0.5 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.5 +0.1 -0.7 +0.2 N.D.
carbon source methyl-beta-D-xylopyranoside (C) +1.0 +0.2 +0.7 +0.1 N.D.
stress R2A with Vancomycin 0.009 mM +2.0 -0.1 +0.7 -0.3 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +2.0 +0.3 -0.1 +0.2 N.D.
nitrogen source DL-2-Aminobutyric (N) +1.2 +0.5 -0.2 +0.9 N.D.
carbon source D-Saccharic potassium salt (C) +0.2 -0.1 +2.4 +0.2 N.D.
carbon source D-Saccharic potassium salt (C) +0.5 -0.1 +2.5 +0.0 N.D.
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