Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0063 and Atu0064 are separated by 224 nucleotidesAtu0064 and Atu0065 overlap by 1 nucleotidesAtu0065 and Atu0066 overlap by 4 nucleotidesAtu0066 and Atu0068 are separated by 664 nucleotides Atu0063: Atu0063 - ABC transporter, substrate binding protein (sugar), at 66,551 to 67,573 Atu0063 Atu0064: Atu0064 - ABC transporter, membrane spanning protein (sugar), at 67,798 to 68,880 Atu0064 Atu0065: Atu0065 - ABC transporter, nucleotide binding/ATPase protein (sugar), at 68,880 to 69,662 Atu0065 Atu0066: Atu0066 - putative kinase, at 69,659 to 70,288 Atu0066 Atu0068: Atu0068 - glutaredoxin protein, at 70,953 to 71,174 Atu0068
Group Condition Atu0063 Atu0064 Atu0065 Atu0066 Atu0068
carbon source D-Fructose (C) -7.6 -5.6 -5.6 -0.0 N.D.
carbon source D-Fructose (C) -4.0 -5.3 -5.8 -0.1 N.D.
carbon source Xylitol (C) -2.0 -3.1 -2.8 +1.5 N.D.
carbon source Xylitol (C) -2.6 -2.3 -2.3 +1.5 N.D.
carbon source D-Mannose (C) -0.6 -0.8 -0.7 +0.2 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.5 -0.3 -0.6 N.D.
carbon source D-Mannose (C) -0.3 -0.8 -0.8 +0.3 N.D.
in planta Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -1.2 +0.0 +0.0 -0.4 N.D.
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.6 -0.2 -0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.8 -0.4 -0.2 -0.1 N.D.
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.5 -0.3 -0.4 -0.2 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -1.3 -0.1 +0.2 -0.0 N.D.
carbon source D-Ribose (C) -0.4 -0.5 -0.7 +0.2 N.D.
in planta Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.6 -0.7 +0.3 -0.3 N.D.
in planta Plant=Maize; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.9 -0.3 -0.3 +0.2 N.D.
carbon source D-Ribose (C) -0.3 -0.6 -0.6 +0.4 N.D.
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.7 -0.1 +0.3 +0.5 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct +0.6 +0.1 +0.0 -0.6 N.D.
stress R2A with m-arsenite 0.8 mM +0.5 +0.6 +0.3 -1.1 N.D.
stress R2A with m-arsenite 0.8 mM +0.3 +0.5 +0.4 -1.0 N.D.
nitrogen source DL-2-Aminobutyric (N) -0.1 -0.5 +0.7 +0.3 N.D.
in planta Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 +0.3 -0.1 -0.3 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days +0.8 -0.1 -0.1 +0.5 N.D.
in planta Plant=Sorghum_F72_F505; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.5 +0.3 +0.5 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.1 +0.3 +0.2 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.3 +0.5 +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.6 +0.5 +0.1 +0.3 N.D.
phage AgroPhage_C10 +1.0 +0.3 +0.4 +0.2 N.D.
carbon source L-Sorbose (C) +1.4 +0.8 +0.8 -0.2 N.D.
carbon source L-Sorbose (C) +2.2 +1.6 +1.6 -0.1 N.D.
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