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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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500 nt
Atu0031 and Atu0032 are separated by 125 nucleotides
Atu0032 and Atu0033 overlap by 11 nucleotides
Atu0033 and Atu0034 are separated by 55 nucleotides
Atu0034 and Atu0035 are separated by 338 nucleotides
Atu0031: Atu0031 - PTS system, IIA component, at 33,698 to 34,099
Atu0031
Atu0032: Atu0032 - hypothetical protein, at 34,225 to 34,689
Atu0032
Atu0033: Atu0033 - two component sensor kinase, at 34,679 to 36,469
Atu0033
Atu0034: Atu0034 - two component response regulator, at 36,525 to 37,250
Atu0034
Atu0035: Atu0035 - phosphoenolpyruvate carboxykinase, at 37,589 to 39,199
Atu0035
Group
Condition
Atu0031
Atu0032
Atu0033
Atu0034
Atu0035
carbon source
D-Galacturonic Acid (C)
-5.4
N.D.
N.D.
N.D.
-5.7
carbon source
D-Quinic (C)
-4.3
N.D.
N.D.
N.D.
-6.4
carbon source
D-Quinic (C)
-2.9
N.D.
N.D.
N.D.
-7.8
carbon source
Glutaric (C)
-5.3
N.D.
N.D.
N.D.
-5.3
nitrogen source
NAG (N)
-3.9
N.D.
N.D.
N.D.
-6.1
carbon source
trans-aconitic (C)
-3.6
N.D.
N.D.
N.D.
-5.8
carbon source
pyruvate (C)
-1.9
N.D.
N.D.
N.D.
-7.3
carbon source
D-Glucuronic gamma lactone (C)
-2.7
N.D.
N.D.
N.D.
-6.3
carbon source
trans-aconitic (C)
-1.4
N.D.
N.D.
N.D.
-7.5
carbon source
p-Coumaric (C)
-3.8
N.D.
N.D.
N.D.
-5.0
carbon source
succinate (C)
-1.8
N.D.
N.D.
N.D.
-6.5
carbon source
D-glutamine (C)
-0.9
N.D.
N.D.
N.D.
-7.4
carbon source
L-Arabinose (C)
-0.8
N.D.
N.D.
N.D.
-7.4
carbon source
Protocatechuic Acid (C)
-0.9
N.D.
N.D.
N.D.
-6.9
carbon source
D-Arabinose (C)
-3.9
N.D.
N.D.
N.D.
-3.9
carbon source
1,5-Pentanediol (C)
-3.0
N.D.
N.D.
N.D.
-4.7
carbon source
D,L-Malic Acid (C)
-2.7
N.D.
N.D.
N.D.
-5.0
nitrogen source
L-Proline (N)
-1.9
N.D.
N.D.
N.D.
-5.8
nitrogen source
NAG (N)
-1.9
N.D.
N.D.
N.D.
-5.8
nitrogen source
L-Alanine (N)
-0.9
N.D.
N.D.
N.D.
-6.7
carbon source
L-Fucose (C)
-0.5
N.D.
N.D.
N.D.
-7.0
carbon source
Ethyl benzoate (C)
-2.6
N.D.
N.D.
N.D.
-4.9
carbon source
D-Galacturonic Acid (C)
-2.4
N.D.
N.D.
N.D.
-5.1
carbon source
Protocatechuic Acid (C)
-0.4
N.D.
N.D.
N.D.
-7.1
nitrogen source
L-Histidine (N)
-0.7
N.D.
N.D.
N.D.
-6.7
carbon source
pyruvate (C)
-1.5
N.D.
N.D.
N.D.
-5.9
nitrogen source
L-pyroglutamic (N)
-2.3
N.D.
N.D.
N.D.
-5.0
carbon source
4-Hydroxybenzoic Acid (C)
-0.6
N.D.
N.D.
N.D.
-6.6
carbon source
4-Aminobutyric (C)
-1.5
N.D.
N.D.
N.D.
-5.7
carbon source
cholate (C)
-2.3
N.D.
N.D.
N.D.
-4.9
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