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Protein
Homologs
Fitness for 5 genes in
Agrobacterium fabrum C58
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Atu0026 and Atu0027 overlap by 4 nucleotides
Atu0027 and Atu0028 overlap by 4 nucleotides
Atu0028 and Atu0029 are separated by 44 nucleotides
Atu0029 and Atu0030 are separated by 128 nucleotides
Atu0026: Atu0026 - hypothetical protein, at 27,520 to 29,031
Atu0026
Atu0027: Atu0027 - two component sensor kinase, at 29,028 to 31,673
Atu0027
Atu0028: Atu0028 - hypothetical protein, at 31,670 to 31,837
Atu0028
Atu0029: Atu0029 - S-adenosylhomocysteine hydrolase, at 31,882 to 33,282
Atu0029
Atu0030: Atu0030 - phosphocarrier protein HPr, at 33,411 to 33,686
Atu0030
Group
Condition
Atu0026
Atu0027
Atu0028
Atu0029
Atu0030
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-4.0
N.D.
N.D.
-2.1
-5.8
in planta
Plant=Sorghum_B5_999; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-3.9
N.D.
N.D.
-2.0
-5.8
in planta
Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-4.2
N.D.
N.D.
-1.1
-6.1
in planta
Plant=Sorghum_X54_243; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-4.3
N.D.
N.D.
-0.9
-6.1
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-4.1
N.D.
N.D.
-1.0
-6.0
carbon source
D-Glucose-6-Phosphate (C)
-0.1
N.D.
N.D.
-4.1
-5.9
in planta
Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
-2.8
N.D.
N.D.
-2.1
-5.1
carbon source
NAG (C)
-1.2
N.D.
N.D.
-2.5
-5.8
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-2.6
N.D.
N.D.
-0.7
-6.0
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-1.4
N.D.
N.D.
-2.1
-5.7
carbon source
Ribitol (C)
-0.2
N.D.
N.D.
-3.0
-6.0
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-1.0
N.D.
N.D.
-2.4
-5.6
in planta
Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-1.3
N.D.
N.D.
-2.1
-5.6
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.3
N.D.
N.D.
-2.9
-5.7
in planta
Plant=Arabidopsis_col0; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-2.1
N.D.
N.D.
-1.1
-5.5
carbon source
4-Aminobutyric (C)
-1.1
N.D.
N.D.
-1.9
-5.7
in planta
Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.8
N.D.
N.D.
-2.0
-5.9
carbon source
p-Coumaric (C)
-0.7
N.D.
N.D.
-2.1
-5.8
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-1.6
N.D.
N.D.
-1.2
-5.8
in planta
Plant=Sorghum_X50_665; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
-4.3
N.D.
N.D.
-0.9
-3.4
carbon source
L-Galactose (C)
+0.7
N.D.
N.D.
-3.0
-6.2
in planta
Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
-0.9
N.D.
N.D.
-1.8
-5.7
carbon source
D-Glucuronic gamma lactone (C)
-1.2
N.D.
N.D.
-2.6
-4.6
carbon source
D-Fructose (C)
+0.4
N.D.
N.D.
-2.6
-6.0
carbon source
D-Mannitol (C)
+0.5
N.D.
N.D.
-2.1
-6.0
in planta
Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
+0.4
N.D.
N.D.
-1.8
-6.1
carbon source
Xylobiose (C)
+0.6
N.D.
N.D.
-2.2
-5.9
carbon source
Stachyose (C)
+0.5
N.D.
N.D.
-1.9
-5.9
carbon source
D-Mannitol (C)
+1.0
N.D.
N.D.
-1.9
-6.0
carbon source
acetate (C)
+1.2
N.D.
N.D.
-1.5
-6.0
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