Fitness for 5 genes in Agrobacterium fabrum C58

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500 ntAtu0012 and Atu0013 are separated by 104 nucleotidesAtu0013 and Atu0014 are separated by 128 nucleotidesAtu0014 and Atu0015 are separated by 161 nucleotidesAtu0015 and Atu0016 are separated by 69 nucleotides Atu0012: Atu0012 - DNA gyrase subunit B, at 8,064 to 10,499 Atu0012 Atu0013: Atu0013 - NAD(P)H-flavin oxidoreductase, at 10,604 to 11,206 Atu0013 Atu0014: Atu0014 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 11,335 to 12,177 Atu0014 Atu0015: Atu0015 - intracellular PHB depolymerase, at 12,339 to 13,535 Atu0015 Atu0016: Atu0016 - hypothetical protein, at 13,605 to 14,372 Atu0016
Group Condition Atu0012 Atu0013 Atu0014 Atu0015 Atu0016
carbon source L-Fucose (C) N.D. -0.0 -4.5 +0.1 N.D.
carbon source L-Fucose (C) N.D. +0.0 -3.9 -0.1 N.D.
carbon source L-Xylose (C) N.D. -0.3 -3.6 +0.0 N.D.
carbon source D-Arabinose (C) N.D. -0.1 -3.9 +0.4 N.D.
carbon source D-Arabinose (C) N.D. -0.0 -4.0 +0.5 N.D.
carbon source L-Xylose (C) N.D. +0.1 -3.2 -0.1 N.D.
stress R2A with m-arsenite 0.8 mM N.D. -0.1 -0.1 -1.8 N.D.
carbon source L-ascorbate (C) N.D. +0.0 -1.8 -0.1 N.D.
carbon source L-ascorbate (C) N.D. +0.0 -1.4 -0.3 N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.3 -0.4 -0.6 N.D.
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days N.D. -0.6 -0.1 -0.6 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -0.6 +0.1 -0.7 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.2 -0.6 -0.5 N.D.
in planta Plant=Wheat; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -1.4 -0.1 +0.4 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. -0.5 +0.1 -0.7 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -0.9 +0.2 -0.2 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. -0.9 +0.2 -0.1 N.D.
stress R2A with Calcium Chloride Dihydrate 87.5 mM N.D. -0.2 +0.2 -0.8 N.D.
lb_tobacco_leaf LB_Tobacco_Leaf N.D. -0.6 +0.2 -0.4 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=1days N.D. -0.7 +0.2 -0.2 N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days N.D. -0.6 +0.4 -0.3 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. -0.7 +0.5 -0.2 N.D.
in planta Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days N.D. +0.4 -0.1 -0.7 N.D.
nophagecontrol No phage control N.D. -0.8 +0.5 -0.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.7 -0.2 -0.6 N.D.
in planta Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 +0.5 -0.5 N.D.
in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. -0.2 +0.7 +0.4 N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct N.D. +0.4 +0.6 +0.3 N.D.
carbon source gluconate (C) N.D. -0.1 +0.1 +1.5 N.D.
carbon source gluconate (C) N.D. +0.3 +0.1 +1.7 N.D.
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