Fitness for 3 genes in Agrobacterium fabrum C58

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500 ntAtu0001 and Atu0002 are separated by 31 nucleotidesAtu0002 and Atu0003 overlap by 8 nucleotides Atu0001: Atu0001 - hypothetical protein, at 203 to 1,024 Atu0001 Atu0002: Atu0002 - putative inhibitor of septum formation, at 1,056 to 1,655 Atu0002 Atu0003: Atu0003 - shikimate 5-dehydrogenase, at 1,648 to 2,508 Atu0003
Group Condition Atu0001 Atu0002 Atu0003
in planta Plant=Sorghum; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct -0.8 N.D. N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) -0.6 N.D. N.D.
stress R2A with tungstate 375 mM -0.6 N.D. N.D.
stress R2A with Phosphomycin 50 mM -0.6 N.D. N.D.
in planta Plant=Arabidopsis_efr; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 N.D. N.D.
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.6 N.D. N.D.
stress Nerol 1.25 mM -0.6 N.D. N.D.
in planta Plant=Cucumber; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days -0.6 N.D. N.D.
phage Phage 100.2 + bactiera -0.6 N.D. N.D.
stress R2A with Fusidic 0.002 mM -0.6 N.D. N.D.
in planta Plant=Tobacco; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=3days -0.5 N.D. N.D.
stress R2A with Strontium chloride 750 mM -0.5 N.D. N.D.
carbon source L-ascorbate (C) -0.5 N.D. N.D.
carbon source D-Leucrose (C) -0.5 N.D. N.D.
in planta Plant=Sorghum_SS_20; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct -0.5 N.D. N.D.
stress methyl jasmonate 5 mM -0.5 N.D. N.D.
phage Phage 100.2 + bactiera -0.5 N.D. N.D.
in planta Plant=Arabidopsis_col0; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=5days -0.5 N.D. N.D.
carbon source D-Arabinose (C) +0.5 N.D. N.D.
nophagecontrol No phage control +0.5 N.D. N.D.
in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct +0.6 N.D. N.D.
no phage P4L5 +0.6 N.D. N.D.
phage Phage 95.3 + bacteria +0.6 N.D. N.D.
carbon source D-Arabinose (C) +0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 N.D. N.D.
phage AgroPhage_C04 +0.8 N.D. N.D.
nitrogen source DL-2-Aminobutyric (N) +0.9 N.D. N.D.
stress R2A with Vancomycin 0.009 mM +1.1 N.D. N.D.
stress R2A with Vancomycin 0.009 mM +1.3 N.D. N.D.
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