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Cofit
Fitness for 5 genes in
Magnetospirillum magneticum AMB-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AMB_RS23855 and AMB_RS02110 are separated by 262 nucleotides
AMB_RS02110 and AMB_RS23860 are separated by 395 nucleotides
AMB_RS23860 and AMB_RS02120 are separated by 182 nucleotides
AMB_RS02120 and AMB_RS02125 are separated by 344 nucleotides
AMB_RS23855: AMB_RS23855 - PDZ domain-containing protein, at 440,944 to 443,247
_RS23855
AMB_RS02110: AMB_RS02110 - IS701 family transposase ISMmg4, at 443,510 to 444,817
_RS02110
AMB_RS23860: AMB_RS23860 - IS256 family transposase, at 445,213 to 445,566
_RS23860
AMB_RS02120: AMB_RS02120 - hypothetical protein, at 445,749 to 446,084
_RS02120
AMB_RS02125: AMB_RS02125 - LemA family protein, at 446,429 to 447,079
_RS02125
Group
Condition
AMB
_RS23855
AMB
_RS02110
AMB
_RS23860
AMB
_RS02120
AMB
_RS02125
magnetic pulldown
150_nonmag_3
-0.2
+0.1
-0.1
-0.2
-0.9
carbon source
carbonsource_all
+0.1
-0.1
+0.4
+0.0
-1.5
magnetic pulldown
150_initial_2
-0.1
+0.1
-0.3
+0.1
-0.6
magnetic pulldown
30_nonmag_1
-0.2
+0.2
-0.0
+0.1
-0.7
magnetic pulldown
150_initial_3
-0.1
+0.1
-0.6
+0.1
-0.1
magnetic pulldown
30_initial_1
-0.0
+0.1
-0.1
+0.1
-0.7
magnetic pulldown
30_nonmag_2
-0.1
+0.2
-0.3
+0.1
-0.4
magnetic pulldown
30_initial_2
-0.2
+0.1
+0.1
+0.2
-0.7
carbon source
carbonsource_succinate
-0.0
+0.1
-0.0
-0.1
-0.4
magnetic pulldown
30_initial_3
+0.0
+0.0
-0.3
+0.1
-0.2
magnetic pulldown
without_iron2
+0.0
-0.0
-0.1
+0.2
-0.4
magnetic pulldown
without_iron1
-0.0
-0.0
+0.1
+0.1
-0.5
magnetic pulldown
30_mag_1
+0.0
+0.0
-0.4
+0.1
+0.0
magnetic pulldown
30_an_nonmag_1
+0.0
+0.1
-0.4
+0.1
+0.3
magnetic pulldown
150_mag_2
+0.1
-0.0
-0.3
+0.1
+0.2
magnetic pulldown
30_nonmag_3
-0.2
+0.2
+0.1
+0.1
+0.1
magnetic pulldown
150_nonmag_1
-0.2
+0.2
+0.3
-0.0
-0.1
magnetic pulldown
30_an_nonmag_2
-0.0
-0.2
-0.2
+0.2
+0.5
magnetic pulldown
30_an_initial_2
+0.0
-0.2
+0.3
-0.1
+0.3
magnetic pulldown
30_an_nonmag_3
+0.0
+0.3
+0.1
-0.0
-0.1
magnetic pulldown
an_mag_3
+0.2
-0.3
+0.1
-0.2
+0.5
magnetic pulldown
30_an_initial_1
-0.1
-0.0
-0.0
+0.3
+0.1
magnetic pulldown
30_an_initial_3
-0.1
-0.1
+0.3
+0.2
-0.0
magnetic pulldown
30_mag_2
+0.0
-0.0
-0.0
+0.2
+0.4
magnetic pulldown
30_an_mag_2
+0.0
-0.1
+0.1
+0.2
+0.3
magnetic pulldown
150_nonmag_2
-0.1
+0.2
-0.8
-0.1
+1.4
magnetic pulldown
30_mag_3
+0.0
-0.0
-0.1
+0.1
+0.7
magnetic pulldown
30_an_mag_3
+0.0
-0.2
+0.0
+0.1
+0.7
magnetic pulldown
30_an_mag_1
+0.1
-0.2
+0.2
+0.1
+0.7
magnetic pulldown
150_an_nonmag_2
+0.1
+0.1
+0.1
+0.1
+0.5
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