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Cofit
Fitness for 5 genes in
Magnetospirillum magneticum AMB-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AMB_RS18870 and AMB_RS18875 overlap by 4 nucleotides
AMB_RS18875 and AMB_RS18880 are separated by 70 nucleotides
AMB_RS18880 and AMB_RS18885 are separated by 344 nucleotides
AMB_RS18885 and AMB_RS18890 are separated by 272 nucleotides
AMB_RS18870: AMB_RS18870 - fructose-bisphosphatase class II, at 4,102,808 to 4,103,800
_RS18870
AMB_RS18875: AMB_RS18875 - single-stranded-DNA-specific exonuclease RecJ, at 4,103,797 to 4,105,590
_RS18875
AMB_RS18880: AMB_RS18880 - tRNA-Glu, at 4,105,661 to 4,105,736
_RS18880
AMB_RS18885: AMB_RS18885 - hypothetical protein, at 4,106,081 to 4,106,428
_RS18885
AMB_RS18890: AMB_RS18890 - hypothetical protein, at 4,106,701 to 4,106,952
_RS18890
Group
Condition
AMB
_RS18870
AMB
_RS18875
AMB
_RS18880
AMB
_RS18885
AMB
_RS18890
magnetic pulldown
an_mag_3
-1.2
N.D.
N.D.
+0.3
-2.0
magnetic pulldown
30_an_nonmag_1
-0.1
N.D.
N.D.
-0.7
-1.0
magnetic pulldown
30_an_initial_3
-0.3
N.D.
N.D.
-0.7
+0.1
magnetic pulldown
30_an_initial_1
-0.1
N.D.
N.D.
-0.5
-0.3
magnetic pulldown
30_nonmag_2
-0.2
N.D.
N.D.
-0.2
-0.3
magnetic pulldown
30_an_mag_2
-0.3
N.D.
N.D.
-0.5
+0.1
magnetic pulldown
30_an_initial_2
-0.4
N.D.
N.D.
-0.5
+0.4
magnetic pulldown
30_an_mag_3
-0.3
N.D.
N.D.
-0.6
+0.4
carbon source
carbonsource_succinate
-0.3
N.D.
N.D.
-0.2
-0.1
magnetic pulldown
30_initial_2
-0.1
N.D.
N.D.
-0.2
-0.2
magnetic pulldown
150_nonmag_3
+0.1
N.D.
N.D.
-0.1
-0.5
magnetic pulldown
150_an_nonmag_2
+0.9
N.D.
N.D.
-0.8
-0.5
magnetic pulldown
150_initial_1
-0.1
N.D.
N.D.
-0.2
-0.0
magnetic pulldown
without_iron1
+0.0
N.D.
N.D.
-0.1
-0.1
magnetic pulldown
30_an_nonmag_2
+0.5
N.D.
N.D.
-0.3
-0.4
magnetic pulldown
30_mag_3
+0.1
N.D.
N.D.
-0.2
-0.1
magnetic pulldown
150_initial_3
-0.0
N.D.
N.D.
-0.2
+0.1
magnetic pulldown
30_initial_3
+0.0
N.D.
N.D.
+0.1
-0.3
magnetic pulldown
30_nonmag_1
+0.2
N.D.
N.D.
-0.1
-0.1
magnetic pulldown
30_an_nonmag_3
+0.6
N.D.
N.D.
-1.0
+0.3
magnetic pulldown
30_nonmag_3
+0.1
N.D.
N.D.
-0.1
-0.0
magnetic pulldown
150_mag_3
+0.0
N.D.
N.D.
-0.2
+0.2
magnetic pulldown
30_an_mag_1
-0.2
N.D.
N.D.
-0.4
+0.7
magnetic pulldown
150_nonmag_1
+0.3
N.D.
N.D.
-0.2
-0.0
magnetic pulldown
30_initial_1
-0.1
N.D.
N.D.
+0.0
+0.2
magnetic pulldown
30_mag_1
-0.1
N.D.
N.D.
+0.2
+0.1
magnetic pulldown
150_initial_2
-0.1
N.D.
N.D.
+0.1
+0.3
magnetic pulldown
150_an_nonmag_3
+0.4
N.D.
N.D.
-0.4
+0.4
magnetic pulldown
150_an_nonmag_1
+0.4
N.D.
N.D.
-0.6
+0.6
magnetic pulldown
150_nonmag_2
+0.4
N.D.
N.D.
+0.7
-0.5
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