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Cofit
Protein
Homologs
Fitness for 5 genes in
Magnetospirillum magneticum AMB-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AMB_RS24370 and AMB_RS09795 overlap by 20 nucleotides
AMB_RS09795 and AMB_RS09800 are separated by 67 nucleotides
AMB_RS09800 and AMB_RS09805 overlap by 4 nucleotides
AMB_RS09805 and AMB_RS09810 are separated by 32 nucleotides
AMB_RS24370: AMB_RS24370 - hypothetical protein, at 2,084,897 to 2,085,235
_RS24370
AMB_RS09795: AMB_RS09795 - integrase, at 2,085,216 to 2,086,328
_RS09795
AMB_RS09800: AMB_RS09800 - uptake hydrogenase, at 2,086,396 to 2,087,841
_RS09800
AMB_RS09805: AMB_RS09805 - uptake hydrogenase, at 2,087,838 to 2,088,863
_RS09805
AMB_RS09810: AMB_RS09810 - hypothetical protein, at 2,088,896 to 2,089,552
_RS09810
Group
Condition
AMB
_RS24370
AMB
_RS09795
AMB
_RS09800
AMB
_RS09805
AMB
_RS09810
carbon source
carbonsource_all
+0.0
-0.2
-0.7
-0.3
-0.3
magnetic pulldown
150_mag_1
-0.2
+0.2
-0.2
+0.2
-0.3
magnetic pulldown
30_an_nonmag_1
+0.3
-0.2
-0.7
+0.2
+0.2
magnetic pulldown
without_iron2
-0.1
+0.2
-0.2
+0.0
-0.0
magnetic pulldown
an_mag_3
-0.3
+0.1
+0.4
-0.1
-0.3
magnetic pulldown
30_initial_3
-0.1
-0.0
-0.1
+0.2
-0.1
magnetic pulldown
30_mag_2
-0.1
+0.1
+0.1
-0.1
-0.1
magnetic pulldown
30_an_mag_2
+0.0
-0.3
+0.1
+0.2
+0.0
magnetic pulldown
30_nonmag_1
-0.0
-0.1
-0.0
+0.2
-0.0
magnetic pulldown
150_nonmag_3
+0.1
-0.2
+0.3
-0.1
-0.1
magnetic pulldown
150_an_nonmag_2
-0.0
+0.3
-0.8
+0.2
+0.4
magnetic pulldown
30_mag_1
-0.0
+0.0
+0.2
+0.1
-0.1
magnetic pulldown
30_an_initial_3
-0.0
-0.1
-0.0
+0.4
-0.0
magnetic pulldown
30_nonmag_3
+0.0
+0.1
-0.1
+0.3
-0.2
magnetic pulldown
150_an_nonmag_3
-0.1
+0.1
-0.1
+0.1
+0.1
magnetic pulldown
150_mag_3
-0.1
+0.0
-0.1
+0.3
+0.0
carbon source
carbonsource_succinate
-0.1
-0.0
+0.3
-0.1
+0.1
magnetic pulldown
150_an_nonmag_1
-0.0
-0.1
+0.2
+0.4
-0.3
magnetic pulldown
30_initial_2
-0.1
-0.0
-0.0
+0.3
-0.0
magnetic pulldown
150_initial_3
-0.0
+0.1
-0.2
+0.4
-0.1
magnetic pulldown
30_mag_3
-0.1
+0.3
+0.2
-0.0
-0.1
magnetic pulldown
30_an_initial_1
-0.0
-0.0
+0.0
+0.5
-0.1
magnetic pulldown
150_initial_1
-0.2
+0.1
+0.1
+0.3
+0.1
magnetic pulldown
30_nonmag_2
+0.0
-0.0
+0.2
+0.5
-0.2
magnetic pulldown
30_an_nonmag_3
+0.1
-0.1
+0.1
+0.5
-0.2
magnetic pulldown
150_nonmag_2
+0.2
-0.1
-0.6
+0.7
+0.2
magnetic pulldown
30_an_initial_2
+0.1
-0.1
+0.2
+0.2
+0.1
magnetic pulldown
30_an_mag_3
+0.0
+0.1
+0.0
+0.4
+0.1
magnetic pulldown
30_an_nonmag_2
-0.1
+0.3
+0.2
+0.2
+0.0
magnetic pulldown
30_initial_1
-0.1
+0.1
+0.3
+0.2
+0.1
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AMB_RS09800
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AMB_RS09810
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