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Cofit
Protein
Homologs
Fitness for 5 genes in
Magnetospirillum magneticum AMB-1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AMB_RS01170 and AMB_RS01175 are separated by 23 nucleotides
AMB_RS01175 and AMB_RS01180 overlap by 16 nucleotides
AMB_RS01180 and AMB_RS01185 are separated by 3 nucleotides
AMB_RS01185 and AMB_RS01190 are separated by 192 nucleotides
AMB_RS01170: AMB_RS01170 - copper export protein, at 259,328 to 260,911
_RS01170
AMB_RS01175: AMB_RS01175 - C4-dicarboxylate ABC transporter, at 260,935 to 262,242
_RS01175
AMB_RS01180: AMB_RS01180 - dihydrofolate reductase, at 262,227 to 262,748
_RS01180
AMB_RS01185: AMB_RS01185 - HD domain-containing protein, at 262,752 to 264,527
_RS01185
AMB_RS01190: AMB_RS01190 - UbiD family decarboxylase, at 264,720 to 266,234
_RS01190
Group
Condition
AMB
_RS01170
AMB
_RS01175
AMB
_RS01180
AMB
_RS01185
AMB
_RS01190
magnetic pulldown
150_an_nonmag_3
+0.2
-1.2
-1.2
+0.4
-3.9
magnetic pulldown
30_an_initial_3
+0.0
-0.3
+0.1
-0.3
-4.6
magnetic pulldown
30_an_initial_1
+0.0
-0.2
-0.0
-0.4
-4.5
magnetic pulldown
30_an_nonmag_1
+0.2
-0.6
-0.4
-0.6
-3.6
magnetic pulldown
30_an_mag_3
+0.2
-0.1
-0.3
-0.1
-4.6
magnetic pulldown
30_an_mag_1
+0.1
-0.2
-0.3
+0.2
-4.6
magnetic pulldown
30_an_nonmag_3
-0.0
+0.1
-0.3
-0.2
-4.0
magnetic pulldown
30_an_mag_2
+0.1
-0.4
+0.1
+0.1
-4.2
magnetic pulldown
150_an_nonmag_2
-0.9
-0.7
+0.6
+0.1
-3.3
magnetic pulldown
an_mag_3
-0.4
-1.0
-0.0
+0.1
-2.7
magnetic pulldown
30_an_initial_2
+0.3
-0.3
-0.1
+0.1
-3.9
magnetic pulldown
30_an_nonmag_2
-0.1
-0.2
+0.4
-0.3
-3.5
carbon source
carbonsource_all
-0.1
+0.0
-0.5
-0.1
-2.9
magnetic pulldown
150_an_nonmag_1
+0.3
-1.3
+0.6
+0.1
-3.2
magnetic pulldown
without_iron1
-0.2
+0.2
+0.2
-0.1
-2.2
magnetic pulldown
150_mag_2
+0.3
+0.0
+0.4
+0.4
-2.6
magnetic pulldown
30_initial_3
+0.1
+0.2
+0.1
-0.2
-1.8
magnetic pulldown
150_nonmag_2
-0.6
+0.4
-0.6
-0.1
-0.6
magnetic pulldown
30_mag_2
+0.1
+0.3
+0.4
+0.2
-2.5
magnetic pulldown
30_initial_2
+0.0
+0.1
+0.9
-0.5
-1.9
magnetic pulldown
150_nonmag_1
+0.1
-0.2
+0.4
-1.0
-0.5
magnetic pulldown
150_initial_1
+0.2
+0.0
+0.3
+0.1
-1.9
magnetic pulldown
30_mag_3
+0.2
+0.2
+0.0
+0.4
-2.1
magnetic pulldown
150_mag_1
-0.2
+0.3
+0.2
+0.3
-1.8
magnetic pulldown
30_initial_1
+0.3
+0.3
+0.4
-0.1
-1.8
magnetic pulldown
30_mag_1
-0.0
+0.0
+0.6
+0.4
-2.0
magnetic pulldown
150_initial_3
+0.2
+0.0
+0.6
+0.3
-2.1
magnetic pulldown
150_mag_3
+0.3
+0.2
+0.0
+0.4
-1.9
magnetic pulldown
30_nonmag_3
+0.3
+0.1
+0.2
-0.2
-1.0
magnetic pulldown
150_initial_2
-0.1
+0.1
+0.3
+0.6
-1.4
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