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Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS22340 and ABZR88_RS22345 are separated by 102 nucleotides
ABZR88_RS22345 and ABZR88_RS22350 overlap by 20 nucleotides
ABZR88_RS22350 and ABZR88_RS22355 overlap by 4 nucleotides
ABZR88_RS22355 and ABZR88_RS22360 are separated by 320 nucleotides
ABZR88_RS22340: ABZR88_RS22340 - tRNA dihydrouridine synthase DusB, at 5,351,608 to 5,352,600
_RS22340
ABZR88_RS22345: ABZR88_RS22345 - CPBP family intramembrane glutamic endopeptidase, at 5,352,703 to 5,353,599
_RS22345
ABZR88_RS22350: ABZR88_RS22350 - DUF2007 domain-containing protein, at 5,353,580 to 5,353,795
_RS22350
ABZR88_RS22355: ABZR88_RS22355 - phosphatidate cytidylyltransferase, at 5,353,792 to 5,354,631
_RS22355
ABZR88_RS22360: ABZR88_RS22360 - iron-sulfur cluster assembly accessory protein, at 5,354,952 to 5,355,305
_RS22360
Group
Condition
ABZR88
_RS22340
ABZR88
_RS22345
ABZR88
_RS22350
ABZR88
_RS22355
ABZR88
_RS22360
carbon source
L-Arabinose (C)
-1.4
-2.9
+0.7
N.D.
-0.7
carbon source
L-Arabinose (C)
-1.5
-2.6
+0.2
N.D.
+0.3
stress
Kanamycin sulfate stress 0.05 mg/ml
-1.3
-1.2
+0.4
N.D.
-1.4
stress
NaCl stress 100 mM
-1.1
-1.4
+0.0
N.D.
-0.8
carbon source
Starch (C)
-0.3
-2.7
+0.3
N.D.
-0.1
stress
Kanamycin sulfate stress 0.05 mg/ml
-0.6
-1.8
+0.1
N.D.
-0.6
carbon source
Beta-Lactose (C)
-0.3
-2.5
-0.1
N.D.
+0.0
carbon source
D-Xylose (C)
-0.2
-2.7
+0.2
N.D.
-0.0
stress
Quercetin stress 0.05 mg/ml
-0.5
-0.6
-0.1
N.D.
-1.4
stress
R2A_low_K2HPO4
-1.9
-0.6
+0.3
N.D.
-0.2
carbon source
Starch (C)
-0.8
-1.8
+0.2
N.D.
+0.0
carbon source
D-Xylose (C)
-0.2
-2.4
+0.4
N.D.
-0.2
carbon source
Beta-Lactose (C)
+0.5
-2.7
+0.2
N.D.
-0.3
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-2.0
-1.3
+0.4
N.D.
+0.8
stress
R2A_high_K2HPO4
-0.9
-1.0
+0.3
N.D.
-0.4
temperature
R2A 15C; 72 hours
-0.5
-1.6
+0.3
N.D.
-0.0
motility_chemotaxis
R2A motility; outer cut
-0.6
-1.0
+0.4
N.D.
-0.6
carbon source
D-Maltose (C)
-0.2
-1.9
+0.3
N.D.
+0.0
temperature
R2A 21C
-1.3
-0.6
-0.1
N.D.
+0.3
temperature
R2A 15C; 72 hours
-0.6
-1.2
+0.5
N.D.
-0.2
carbon source
Melibiose (C)
-0.8
-1.1
+0.0
N.D.
+0.4
carbon source
alginate (C)
+0.8
-2.4
+0.1
N.D.
+0.2
carbon source
D-Maltose (C)
+0.4
-1.8
+0.0
N.D.
+0.1
carbon source
alginate (C)
+0.2
-2.2
+0.4
N.D.
+0.4
carbon source
Melibiose (C)
-0.5
-1.0
+0.7
N.D.
-0.2
motility_chemotaxis
R2A motility; outer cut
+0.0
-0.8
+1.0
N.D.
-0.9
no stress control
R2A no stress control
+1.9
-1.9
+0.2
N.D.
-0.6
stress
R2A with Apigenin 50 ug/ml
+1.1
-0.8
-0.3
N.D.
-0.3
motility_chemotaxis
R2A motility; outer cut
+0.7
-0.7
+0.6
N.D.
-0.8
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.5
-0.9
+0.1
N.D.
+0.8
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