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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS21290 and ABZR88_RS21295 are separated by 257 nucleotides
ABZR88_RS21295 and ABZR88_RS21300 are separated by 528 nucleotides
ABZR88_RS21300 and ABZR88_RS21305 are separated by 83 nucleotides
ABZR88_RS21305 and ABZR88_RS21310 are separated by 134 nucleotides
ABZR88_RS21290: ABZR88_RS21290 - cupin domain-containing protein, at 5,132,052 to 5,132,453
_RS21290
ABZR88_RS21295: ABZR88_RS21295 - hypothetical protein, at 5,132,711 to 5,132,911
_RS21295
ABZR88_RS21300: ABZR88_RS21300 - hypothetical protein, at 5,133,440 to 5,134,081
_RS21300
ABZR88_RS21305: ABZR88_RS21305 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 5,134,165 to 5,134,779
_RS21305
ABZR88_RS21310: ABZR88_RS21310 - DUF4142 domain-containing protein, at 5,134,914 to 5,135,495
_RS21310
Group
Condition
ABZR88
_RS21290
ABZR88
_RS21295
ABZR88
_RS21300
ABZR88
_RS21305
ABZR88
_RS21310
no stress control
R2A no stress control
+0.2
-1.8
-2.4
-1.1
N.D.
stress
R2A_high_K2HPO4
-0.3
-1.1
-0.5
-0.3
N.D.
motility_chemotaxis
R2A motility; outer cut
-0.1
-0.7
-0.6
-0.7
N.D.
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.4
-0.6
-0.3
-0.2
N.D.
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.1
-0.4
-0.2
-0.7
N.D.
temperature
R2A 15C; 72 hours
+0.0
-0.1
-0.6
-0.6
N.D.
temperature
R2A 21C
+0.2
-0.5
-0.8
-0.1
N.D.
carbon source
D-Glucose (C)
-0.2
-0.2
-0.2
-0.5
N.D.
stress
Trimethoprim stress 0.05 mg/ml
+0.1
-1.0
-0.2
-0.1
N.D.
carbon source
D-Maltose (C)
-0.6
+0.3
-0.4
-0.3
N.D.
motility_chemotaxis
R2A motility; outer cut
-0.1
-0.0
-1.0
+0.1
N.D.
temperature
R2A 30C
+0.0
-0.5
-0.2
-0.3
N.D.
carbon source
L-Arabinose (C)
-0.1
-0.2
-0.5
-0.2
N.D.
carbon source
D-Xylose (C)
+0.1
-0.5
-0.2
-0.3
N.D.
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.1
+0.1
-0.7
-0.0
N.D.
stress
copper (II) chloride stress 1 mM
+0.2
-0.4
-0.3
-0.2
N.D.
stress
R2A_low_K2HPO4
+0.2
-0.1
-0.5
-0.3
N.D.
carbon source
L-Rhamnose (C)
+0.3
-0.2
-0.3
-0.5
N.D.
motility_chemotaxis
R2A motility; outer cut
+0.1
+0.1
-0.8
+0.0
N.D.
carbon source
alginate (C)
+0.1
+0.6
-0.7
-0.4
N.D.
carbon source
Pullulan (C)
-0.1
+0.4
-0.1
-0.5
N.D.
carbon source
Melibiose (C)
+0.4
-0.7
+0.3
-0.2
N.D.
carbon source
L-Arabinose (C)
-0.5
+0.3
+0.2
-0.1
N.D.
temperature
R2A 15C; 144 hours
-0.3
+0.6
-0.1
-0.2
N.D.
temperature
R2A 30C; 144 hours
+0.4
+0.2
-0.2
-0.3
N.D.
carbon source
Starch (C)
-0.2
+0.3
+0.4
-0.3
N.D.
carbon source
Beta-Lactose (C)
-0.2
+0.5
+0.1
-0.2
N.D.
carbon source
alginate (C)
-0.0
+0.7
-0.1
-0.2
N.D.
carbon source
Pullulan (C)
+0.1
+0.9
-0.0
-0.3
N.D.
motility_chemotaxis
R2A motility; outer cut
+0.4
+0.6
+0.3
+0.2
N.D.
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