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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS20950 and ABZR88_RS20955 are separated by 13 nucleotides
ABZR88_RS20955 and ABZR88_RS20960 are separated by 371 nucleotides
ABZR88_RS20960 and ABZR88_RS20965 are separated by 356 nucleotides
ABZR88_RS20965 and ABZR88_RS20970 are separated by 195 nucleotides
ABZR88_RS20950: ABZR88_RS20950 - cobalamin B12-binding domain-containing protein, at 5,067,584 to 5,068,006
_RS20950
ABZR88_RS20955: ABZR88_RS20955 - enoyl-CoA hydratase/isomerase family protein, at 5,068,020 to 5,068,796
_RS20955
ABZR88_RS20960: ABZR88_RS20960 - transporter, at 5,069,168 to 5,069,743
_RS20960
ABZR88_RS20965: ABZR88_RS20965 - peroxiredoxin, at 5,070,100 to 5,070,645
_RS20965
ABZR88_RS20970: ABZR88_RS20970 - carboxymuconolactone decarboxylase family protein, at 5,070,841 to 5,071,425
_RS20970
Group
Condition
ABZR88
_RS20950
ABZR88
_RS20955
ABZR88
_RS20960
ABZR88
_RS20965
ABZR88
_RS20970
carbon source
L-Arabinose (C)
-1.2
-0.7
-0.8
N.D.
-1.7
carbon source
Pullulan (C)
-0.2
-0.5
-1.0
N.D.
-0.4
carbon source
Pullulan (C)
-0.7
-0.0
-0.6
N.D.
-0.7
temperature
R2A 30C
-0.3
-0.7
-0.4
N.D.
-0.5
carbon source
L-Arabinose (C)
+0.7
-1.0
-0.4
N.D.
-1.2
carbon source
D-Maltose (C)
+0.1
-0.9
-0.2
N.D.
-0.8
stress
R2A_low_K2HPO4
-0.2
-0.2
-0.9
N.D.
-0.6
carbon source
Starch (C)
-0.3
-1.1
-0.1
N.D.
-0.4
carbon source
Beta-Lactose (C)
-0.1
-1.0
-0.4
N.D.
-0.3
motility_chemotaxis
R2A motility; outer cut
-0.8
-0.7
-0.6
N.D.
+0.2
carbon source
Starch (C)
-0.0
-0.9
-0.3
N.D.
-0.5
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
-0.5
-0.4
-0.4
N.D.
-0.5
carbon source
alginate (C)
+0.2
-0.3
-0.5
N.D.
-1.0
carbon source
Melibiose (C)
-0.2
-0.6
+0.1
N.D.
-0.9
carbon source
alginate (C)
-0.2
-0.1
-0.5
N.D.
-0.9
motility_chemotaxis
R2A motility; outer cut
-1.0
-0.3
+0.3
N.D.
-0.5
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.0
+0.1
-1.3
N.D.
-0.2
motility_chemotaxis
R2A motility; outer cut
-0.0
-0.4
+0.1
N.D.
-1.1
carbon source
Pullulan (C)
-0.1
-0.8
+0.0
N.D.
-0.6
carbon source
D-Xylose (C)
+0.3
-1.3
+0.1
N.D.
-0.4
carbon source
D-Maltose (C)
+0.2
-1.0
-0.2
N.D.
-0.4
stress
Quercetin stress 0.05 mg/ml
-0.3
-0.4
+0.1
N.D.
-0.7
carbon source
D-Glucose (C)
+0.1
-0.3
-0.6
N.D.
-0.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
-0.7
+0.3
-0.2
N.D.
-0.6
no stress control
R2A no stress control
-0.6
-0.3
+0.1
N.D.
-0.5
stress
R2A with Apigenin 50 ug/ml
-0.3
+0.5
-0.9
N.D.
-0.3
stress
potassium fluoride stress 30 mM
-0.0
+0.1
+0.4
N.D.
-1.2
temperature
R2A 15C; 72 hours
+0.1
+0.5
-0.3
N.D.
-0.6
carbon source
L-Rhamnose (C)
+0.6
+0.1
-0.7
N.D.
-0.3
motility_chemotaxis
R2A motility; outer cut
-0.2
+1.5
+0.2
N.D.
-0.3
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