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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS20575 and ABZR88_RS20580 are separated by 135 nucleotides
ABZR88_RS20580 and ABZR88_RS20585 are separated by 84 nucleotides
ABZR88_RS20585 and ABZR88_RS20590 are separated by 242 nucleotides
ABZR88_RS20590 and ABZR88_RS20595 are separated by 2 nucleotides
ABZR88_RS20575: ABZR88_RS20575 - glutathione peroxidase, at 4,982,359 to 4,982,874
_RS20575
ABZR88_RS20580: ABZR88_RS20580 - proline iminopeptidase-family hydrolase, at 4,983,010 to 4,984,029
_RS20580
ABZR88_RS20585: ABZR88_RS20585 - TetR/AcrR family transcriptional regulator, at 4,984,114 to 4,984,683
_RS20585
ABZR88_RS20590: ABZR88_RS20590 - MlaD family protein, at 4,984,926 to 4,985,684
_RS20590
ABZR88_RS20595: ABZR88_RS20595 - ABC transporter ATP-binding protein, at 4,985,687 to 4,986,460
_RS20595
Group
Condition
ABZR88
_RS20575
ABZR88
_RS20580
ABZR88
_RS20585
ABZR88
_RS20590
ABZR88
_RS20595
carbon source
Melibiose (C)
-0.4
-0.1
-0.5
+0.1
-0.0
carbon source
Pullulan (C)
-0.1
-0.0
-0.7
-0.0
+0.0
stress
Trimethoprim stress 0.05 mg/ml
-0.4
-0.1
-0.4
-0.0
+0.1
no stress control
R2A no stress control
-0.1
-0.4
-0.3
-0.0
+0.0
motility_chemotaxis
R2A motility; outer cut
+0.0
-0.4
-0.8
+0.4
-0.0
carbon source
L-Arabinose (C)
-0.3
+0.2
+0.0
-0.2
-0.3
temperature
R2A 15C; 144 hours
+0.1
-0.2
-0.3
+0.0
-0.2
carbon source
D-Maltose (C)
-0.1
-0.0
-0.6
+0.1
+0.1
carbon source
Pullulan (C)
-0.0
+0.0
-0.5
-0.1
+0.1
stress
Kanamycin sulfate stress 0.05 mg/ml
-0.1
+0.0
-0.4
-0.1
+0.1
carbon source
alginate (C)
-0.3
+0.0
-0.3
+0.1
+0.1
carbon source
L-Arabinose (C)
+0.1
+0.1
-0.3
+0.1
-0.4
carbon source
Beta-Lactose (C)
-0.4
+0.1
-0.1
-0.1
+0.1
motility_chemotaxis
R2A motility; outer cut
-0.2
+0.1
-0.6
+0.2
+0.2
carbon source
Pullulan (C)
-0.1
-0.1
-0.1
+0.2
-0.2
temperature
R2A 15C; 72 hours
+0.1
-0.1
-0.4
+0.2
-0.0
motility_chemotaxis
R2A motility; outer cut
+0.1
-0.0
-0.3
+0.2
-0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.1
-0.2
-0.2
+0.2
+0.1
stress
copper (II) chloride stress 1 mM
-0.2
+0.0
-0.2
+0.0
+0.2
temperature
R2A 15C; 144 hours
+0.3
-0.0
-0.7
+0.3
+0.1
stress
R2A with Apigenin 50 ug/ml
-0.5
-0.1
+0.4
+0.2
+0.2
carbon source
Melibiose (C)
-0.4
+0.2
-0.0
+0.2
+0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.2
+0.1
-0.1
+0.2
+0.2
carbon source
Starch (C)
-0.3
+0.2
+0.3
+0.2
+0.1
carbon source
L-Rhamnose (C)
+0.5
+0.0
-0.1
+0.1
-0.1
motility_chemotaxis
R2A motility; outer cut
-0.3
+0.5
-0.4
+0.1
+0.6
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.4
-0.2
+0.1
-0.2
+0.5
carbon source
D-Xylose (C)
+0.2
+0.1
+0.1
+0.2
+0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days
+0.1
+0.1
+0.1
+0.1
+0.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.3
+0.1
-0.1
+0.2
+0.4
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