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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS20005 and ABZR88_RS20010 are separated by 110 nucleotides
ABZR88_RS20010 and ABZR88_RS20015 are separated by 9 nucleotides
ABZR88_RS20015 and ABZR88_RS20020 are separated by 99 nucleotides
ABZR88_RS20020 and ABZR88_RS20025 are separated by 619 nucleotides
ABZR88_RS20005: ABZR88_RS20005 - exodeoxyribonuclease III, at 4,861,862 to 4,862,635
_RS20005
ABZR88_RS20010: ABZR88_RS20010 - peptidylprolyl isomerase, at 4,862,746 to 4,863,441
_RS20010
ABZR88_RS20015: ABZR88_RS20015 - hypothetical protein, at 4,863,451 to 4,863,789
_RS20015
ABZR88_RS20020: ABZR88_RS20020 - energy transducer TonB, at 4,863,889 to 4,864,557
_RS20020
ABZR88_RS20025: ABZR88_RS20025 - peptidoglycan DD-metalloendopeptidase family protein, at 4,865,177 to 4,865,863
_RS20025
Group
Condition
ABZR88
_RS20005
ABZR88
_RS20010
ABZR88
_RS20015
ABZR88
_RS20020
ABZR88
_RS20025
carbon source
alginate (C)
+0.1
-0.3
N.D.
-0.2
-0.3
stress
Erythromycin stress 0.05 mg/ml
+0.0
-0.2
N.D.
-0.4
-0.0
motility_chemotaxis
R2A motility; outer cut
-0.2
-0.2
N.D.
+0.0
-0.2
stress
potassium fluoride stress 30 mM
+0.1
-0.2
N.D.
-0.3
-0.0
stress
potassium fluoride stress 30 mM
-0.0
-0.2
N.D.
-0.2
+0.1
carbon source
L-Rhamnose (C)
+0.1
+0.1
N.D.
-0.0
-0.3
carbon source
Starch (C)
+0.2
-0.2
N.D.
-0.1
-0.1
temperature
R2A 30C
+0.2
-0.2
N.D.
-0.1
-0.0
motility_chemotaxis
R2A motility; outer cut
+0.3
-0.3
N.D.
+0.1
-0.1
carbon source
D-Maltose (C)
+0.0
-0.2
N.D.
-0.1
+0.2
no stress control
R2A no stress control
+0.2
-0.0
N.D.
-0.4
+0.1
carbon source
D-Maltose (C)
+0.3
-0.0
N.D.
+0.1
-0.4
carbon source
D-Xylose (C)
+0.1
+0.1
N.D.
-0.1
+0.1
carbon source
Melibiose (C)
+0.2
+0.3
N.D.
+0.1
-0.2
motility_chemotaxis
R2A motility; outer cut
+0.6
-0.4
N.D.
+0.1
+0.2
motility_chemotaxis
R2A motility; outer cut
+0.5
-0.2
N.D.
+0.4
-0.2
carbon source
Pullulan (C)
+0.3
+0.0
N.D.
+0.1
+0.0
carbon source
D-Xylose (C)
+0.3
+0.2
N.D.
+0.1
-0.0
temperature
R2A 15C; 72 hours
+0.3
-0.1
N.D.
+0.2
+0.1
stress
R2A with Apigenin 50 ug/ml
+0.3
+0.3
N.D.
+0.0
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.4
+0.2
N.D.
-0.3
+0.3
carbon source
D-Glucose (C)
+0.1
+0.2
N.D.
+0.1
+0.1
carbon source
alginate (C)
+0.4
+0.1
N.D.
-0.1
+0.3
carbon source
D-Glucose (C)
+0.2
+0.1
N.D.
+0.2
+0.2
temperature
R2A 15C; 72 hours
+0.4
+0.0
N.D.
+0.0
+0.3
carbon source
Pullulan (C)
+0.3
+0.0
N.D.
+0.1
+0.4
temperature
R2A 15C; 144 hours
+0.5
-0.0
N.D.
+0.0
+0.4
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.3
+0.2
N.D.
-0.0
+0.5
temperature
R2A 15C; 144 hours
+0.4
-0.0
N.D.
+0.4
+0.4
temperature
R2A 30C; 144 hours
+0.5
+0.1
N.D.
+0.4
+0.3
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