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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS19965 and ABZR88_RS19970 are separated by 10 nucleotides
ABZR88_RS19970 and ABZR88_RS19975 are separated by 240 nucleotides
ABZR88_RS19975 and ABZR88_RS19980 overlap by 11 nucleotides
ABZR88_RS19980 and ABZR88_RS19985 are separated by 350 nucleotides
ABZR88_RS19965: ABZR88_RS19965 - amidohydrolase, at 4,853,204 to 4,854,034
_RS19965
ABZR88_RS19970: ABZR88_RS19970 - SDR family oxidoreductase, at 4,854,045 to 4,854,833
_RS19970
ABZR88_RS19975: ABZR88_RS19975 - hypothetical protein, at 4,855,074 to 4,855,436
_RS19975
ABZR88_RS19980: ABZR88_RS19980 - HAD family phosphatase, at 4,855,426 to 4,856,052
_RS19980
ABZR88_RS19985: ABZR88_RS19985 - tetratricopeptide repeat protein, at 4,856,403 to 4,857,965
_RS19985
Group
Condition
ABZR88
_RS19965
ABZR88
_RS19970
ABZR88
_RS19975
ABZR88
_RS19980
ABZR88
_RS19985
carbon source
L-Rhamnose (C)
-0.9
+0.2
-1.4
-0.0
-0.1
no stress control
R2A no stress control
-0.5
+0.1
-1.2
-0.1
+0.1
stress
potassium fluoride stress 30 mM
-0.5
-0.0
-0.6
-0.1
-0.0
stress
R2A with Apigenin 50 ug/ml
-0.4
-0.1
-0.5
+0.2
-0.0
temperature
R2A 30C
-0.5
-0.0
-0.3
-0.1
+0.1
stress
R2A_high_K2HPO4
-0.5
-0.0
-0.4
+0.0
+0.1
stress
NaCl stress 100 mM
-0.3
+0.2
-0.6
-0.0
+0.0
carbon source
D-Glucose (C)
-0.3
+0.1
-0.6
+0.1
+0.1
motility_chemotaxis
R2A motility; outer cut
-0.5
+0.2
-0.8
+0.3
+0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.9
+0.1
+0.1
+0.4
-0.1
carbon source
D-Fructose (C)
+0.3
-0.1
-0.5
+0.0
+0.1
stress
R2A_low_K2HPO4
+0.3
+0.1
-0.6
-0.0
+0.2
carbon source
Pullulan (C)
+0.7
+0.0
-1.0
+0.1
+0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days
-0.4
+0.1
-0.2
+0.3
+0.2
carbon source
L-Rhamnose (C)
+0.2
+0.1
-0.6
+0.3
-0.0
motility_chemotaxis
R2A motility; outer cut
+0.5
-0.0
-0.4
+0.0
+0.0
carbon source
D-Maltose (C)
+0.0
+0.1
-0.5
+0.3
+0.2
carbon source
Starch (C)
+0.4
+0.1
-0.6
+0.1
+0.1
temperature
R2A 30C; 144 hours
+0.2
+0.1
-0.4
-0.0
+0.2
carbon source
alginate (C)
+0.4
+0.0
-0.5
+0.2
+0.2
stress
Trimethoprim stress 0.05 mg/ml
+0.3
+0.0
-0.3
+0.3
-0.0
carbon source
alginate (C)
+0.6
-0.1
-0.3
+0.2
+0.2
carbon source
Beta-Lactose (C)
+0.8
-0.0
-0.3
+0.0
+0.0
carbon source
Pullulan (C)
+0.9
-0.0
-0.4
+0.0
+0.3
temperature
R2A 15C; 72 hours
+0.5
-0.0
-0.0
+0.3
+0.0
carbon source
L-Arabinose (C)
+0.5
+0.1
-0.5
+0.5
+0.2
carbon source
Pullulan (C)
+0.6
+0.0
-0.2
+0.3
+0.2
temperature
R2A 15C; 144 hours
+0.9
+0.0
-0.2
-0.0
+0.3
motility_chemotaxis
R2A motility; outer cut
+1.1
-0.0
+0.4
-0.1
+0.4
motility_chemotaxis
R2A motility; outer cut
+2.9
+0.1
-0.3
+0.6
-0.2
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