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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS19225 and ABZR88_RS19230 are separated by 188 nucleotides
ABZR88_RS19230 and ABZR88_RS19235 are separated by 110 nucleotides
ABZR88_RS19235 and ABZR88_RS19240 are separated by 55 nucleotides
ABZR88_RS19240 and ABZR88_RS19245 are separated by 34 nucleotides
ABZR88_RS19225: ABZR88_RS19225 - hypothetical protein, at 4,689,362 to 4,689,742
_RS19225
ABZR88_RS19230: ABZR88_RS19230 - hypothetical protein, at 4,689,931 to 4,690,332
_RS19230
ABZR88_RS19235: ABZR88_RS19235 - DUF1593 domain-containing protein, at 4,690,443 to 4,691,876
_RS19235
ABZR88_RS19240: ABZR88_RS19240 - hypothetical protein, at 4,691,932 to 4,692,198
_RS19240
ABZR88_RS19245: ABZR88_RS19245 - alpha/beta hydrolase, at 4,692,233 to 4,693,120
_RS19245
Group
Condition
ABZR88
_RS19225
ABZR88
_RS19230
ABZR88
_RS19235
ABZR88
_RS19240
ABZR88
_RS19245
temperature
R2A 30C; 144 hours
-0.1
-0.0
-0.3
-0.3
-0.2
carbon source
D-Maltose (C)
-0.6
+0.0
-0.2
+0.1
-0.2
stress
Quercetin stress 0.05 mg/ml
-0.5
-0.0
-0.1
-0.1
-0.1
carbon source
L-Arabinose (C)
-0.7
+0.2
-0.0
+0.1
-0.2
carbon source
Starch (C)
-0.4
+0.3
-0.3
+0.3
-0.4
motility_chemotaxis
R2A motility; outer cut
-0.3
-0.0
-0.2
+0.3
-0.1
temperature
R2A 30C
-0.4
+0.1
-0.1
+0.2
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.2
+0.1
-0.3
-0.1
+0.0
temperature
R2A 15C; 144 hours
-0.0
-0.1
-0.2
+0.4
-0.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days
+0.1
+0.1
-0.1
-0.1
-0.3
carbon source
alginate (C)
-0.2
+0.2
-0.1
+0.0
-0.2
temperature
R2A 21C
-0.2
+0.2
-0.1
+0.1
-0.2
carbon source
Pullulan (C)
-0.3
+0.1
-0.2
+0.2
+0.0
stress
R2A_low_K2HPO4
-0.2
+0.3
-0.1
+0.1
-0.2
stress
Kanamycin sulfate stress 0.05 mg/ml
-0.3
+0.2
-0.1
+0.1
-0.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
-0.2
+0.2
-0.1
+0.1
-0.2
carbon source
D-Maltose (C)
+0.1
+0.1
-0.2
+0.2
-0.2
temperature
R2A 37C
+0.2
+0.2
-0.2
-0.0
-0.2
carbon source
Beta-Lactose (C)
-0.0
+0.2
-0.3
+0.2
-0.2
carbon source
alginate (C)
-0.3
+0.5
-0.2
+0.1
-0.1
carbon source
Pullulan (C)
-0.2
+0.2
-0.1
+0.2
-0.1
carbon source
Pullulan (C)
-0.2
+0.2
-0.3
+0.5
-0.2
carbon source
Pullulan (C)
-0.2
+0.2
-0.1
+0.5
-0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.1
+0.3
-0.3
-0.2
+0.3
carbon source
Melibiose (C)
+0.1
+0.3
-0.1
+0.1
-0.1
carbon source
Melibiose (C)
-0.3
+0.3
-0.1
+0.2
+0.1
carbon source
L-Arabinose (C)
-0.0
+0.4
-0.1
+0.3
-0.1
no stress control
R2A no stress control
+0.4
+0.1
-0.0
+0.3
-0.2
motility_chemotaxis
R2A motility; outer cut
+0.2
-0.1
+0.1
+0.5
+0.2
motility_chemotaxis
R2A motility; outer cut
-0.4
-0.1
+0.2
+1.6
+0.1
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ABZR88_RS19235
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