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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS19135 and ABZR88_RS19140 are separated by 137 nucleotides
ABZR88_RS19140 and ABZR88_RS19145 are separated by 260 nucleotides
ABZR88_RS19145 and ABZR88_RS19150 are separated by 3 nucleotides
ABZR88_RS19150 and ABZR88_RS19155 are separated by 30 nucleotides
ABZR88_RS19135: ABZR88_RS19135 - HAD family phosphatase, at 4,670,838 to 4,671,503
_RS19135
ABZR88_RS19140: ABZR88_RS19140 - lmo0937 family membrane protein, at 4,671,641 to 4,671,796
_RS19140
ABZR88_RS19145: ABZR88_RS19145 - O-methyltransferase, at 4,672,057 to 4,672,698
_RS19145
ABZR88_RS19150: ABZR88_RS19150 - glucosaminidase domain-containing protein, at 4,672,702 to 4,673,235
_RS19150
ABZR88_RS19155: ABZR88_RS19155 - glucosaminidase domain-containing protein, at 4,673,266 to 4,674,126
_RS19155
Group
Condition
ABZR88
_RS19135
ABZR88
_RS19140
ABZR88
_RS19145
ABZR88
_RS19150
ABZR88
_RS19155
carbon source
L-Arabinose (C)
-0.4
-0.6
-0.8
-0.2
-0.5
carbon source
L-Arabinose (C)
-0.2
-1.2
-0.5
-0.3
-0.4
carbon source
Beta-Lactose (C)
+0.2
-1.9
-0.2
-0.0
-0.4
no stress control
R2A no stress control
-0.0
+0.0
-0.4
-0.3
-0.3
carbon source
Pullulan (C)
+0.2
-1.3
-0.2
+0.4
+0.1
carbon source
Pullulan (C)
+0.2
-0.7
-0.1
+0.2
-0.2
stress
Trimethoprim stress 0.05 mg/ml
-0.1
-0.7
+0.0
+0.0
+0.1
carbon source
D-Xylose (C)
+0.1
-0.6
+0.1
+0.1
-0.2
carbon source
alginate (C)
-0.3
+0.3
-0.1
+0.1
-0.3
carbon source
Beta-Lactose (C)
+0.6
-0.2
-0.0
-0.1
-0.3
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.0
-0.2
+0.0
+0.6
-0.3
carbon source
Melibiose (C)
+0.2
-0.3
+0.3
+0.2
-0.1
carbon source
L-Rhamnose (C)
+0.6
-1.1
+0.8
+0.0
+0.0
carbon source
L-Rhamnose (C)
+0.2
-0.8
+0.7
+0.4
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.0
+0.3
-0.1
+0.4
-0.2
temperature
R2A 15C; 72 hours
+0.2
-0.7
+0.2
+0.6
+0.3
stress
Kanamycin sulfate stress 0.05 mg/ml
-0.3
+0.5
+0.1
+0.4
-0.2
carbon source
Melibiose (C)
+0.0
+0.9
+0.1
+0.0
-0.5
stress
R2A with Apigenin 50 ug/ml
+0.1
+0.5
-0.2
+0.3
-0.0
stress
copper (II) chloride stress 1 mM
+0.1
-0.1
+0.6
+0.5
-0.1
carbon source
Pullulan (C)
-0.0
+0.5
+0.1
+0.4
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.2
+0.6
+0.1
+0.2
-0.1
temperature
R2A 15C; 144 hours
+0.2
+0.0
+0.1
+0.5
+0.1
temperature
R2A 15C; 72 hours
+0.4
+0.2
+0.1
+0.5
-0.1
stress
copper (II) chloride stress 1 mM
+0.0
+0.3
+0.6
+0.5
-0.3
temperature
R2A 30C; 144 hours
+0.0
+0.6
+0.0
+0.6
+0.1
stress
Erythromycin stress 0.05 mg/ml
-0.0
+0.3
+0.4
+0.9
+0.1
motility_chemotaxis
R2A motility; outer cut
+0.9
+0.9
-0.2
-0.2
+0.4
stress
Erythromycin stress 0.05 mg/ml
+0.0
+0.2
+0.5
+1.0
+0.0
motility_chemotaxis
R2A motility; outer cut
+0.5
+1.1
+0.2
+0.5
-0.1
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