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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS14315 and ABZR88_RS14320 overlap by 4 nucleotides
ABZR88_RS14320 and ABZR88_RS14325 are separated by 1 nucleotides
ABZR88_RS14325 and ABZR88_RS14330 overlap by 25 nucleotides
ABZR88_RS14330 and ABZR88_RS14335 are separated by 0 nucleotides
ABZR88_RS14315: ABZR88_RS14315 - DapH/DapD/GlmU-related protein, at 3,553,642 to 3,554,175
_RS14315
ABZR88_RS14320: ABZR88_RS14320 - glycosyltransferase, at 3,554,172 to 3,555,083
_RS14320
ABZR88_RS14325: ABZR88_RS14325 - glycosyl transferase, at 3,555,085 to 3,556,011
_RS14325
ABZR88_RS14330: ABZR88_RS14330 - glycosyltransferase, at 3,555,987 to 3,556,787
_RS14330
ABZR88_RS14335: ABZR88_RS14335 - glycosyltransferase family 2 protein, at 3,556,788 to 3,557,738
_RS14335
Group
Condition
ABZR88
_RS14315
ABZR88
_RS14320
ABZR88
_RS14325
ABZR88
_RS14330
ABZR88
_RS14335
temperature
R2A 30C; 144 hours
-0.2
-0.7
-0.2
-0.0
+0.2
carbon source
L-Rhamnose (C)
-0.2
-0.3
-0.3
+0.1
+0.2
carbon source
L-Arabinose (C)
-0.2
-0.2
-0.1
-0.0
+0.1
no stress control
R2A no stress control
+0.2
-0.7
+0.1
-0.1
+0.1
stress
Erythromycin stress 0.05 mg/ml
-0.1
-0.5
+0.0
+0.2
+0.2
carbon source
L-Rhamnose (C)
+0.1
-0.1
-0.2
-0.1
+0.3
carbon source
alginate (C)
-0.3
+0.0
-0.1
+0.1
+0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.1
-0.3
-0.1
+0.2
+0.2
stress
Erythromycin stress 0.05 mg/ml
+0.1
-0.1
-0.1
+0.3
-0.0
carbon source
D-Maltose (C)
-0.2
+0.0
-0.0
+0.1
+0.5
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days
-0.0
-0.1
-0.1
+0.3
+0.2
stress
R2A_high_K2HPO4
-0.1
-0.0
-0.1
+0.3
+0.2
carbon source
D-Maltose (C)
-0.2
+0.2
-0.0
+0.1
+0.3
stress
copper (II) chloride stress 1 mM
-0.0
+0.1
-0.1
+0.3
+0.2
stress
Esculin Monohydrate stress 5 mM
-0.1
+0.0
+0.0
+0.3
+0.1
carbon source
Melibiose (C)
+0.1
+0.1
-0.1
+0.2
+0.2
carbon source
D-Fructose (C)
+0.1
+0.0
-0.1
+0.4
+0.1
stress
Quercetin stress 0.05 mg/ml
+0.1
-0.1
+0.0
+0.2
+0.2
temperature
R2A 15C; 144 hours
+0.2
+0.2
-0.1
+0.0
+0.3
temperature
R2A 15C; 72 hours
-0.0
+0.3
-0.1
+0.1
+0.3
temperature
R2A 15C; 144 hours
+0.1
+0.3
-0.1
+0.0
+0.4
motility_chemotaxis
R2A motility; outer cut
-0.1
+0.2
-0.1
+0.3
+0.3
stress
R2A with Apigenin 50 ug/ml
+0.0
+0.6
-0.0
+0.1
+0.1
stress
R2A_high_K2HPO4
-0.0
+0.2
+0.1
+0.1
+0.3
temperature
R2A 30C
+0.1
+0.0
+0.2
+0.2
+0.2
temperature
R2A 21C
+0.0
+0.1
+0.1
+0.3
+0.2
stress
Kanamycin sulfate stress 0.05 mg/ml
+0.1
+0.2
+0.1
+0.2
+0.2
motility_chemotaxis
R2A motility; outer cut
+0.0
+0.8
-0.1
+0.5
+0.6
motility_chemotaxis
R2A motility; outer cut
+0.3
+0.6
+0.3
+0.4
+0.8
motility_chemotaxis
R2A motility; outer cut
+0.6
+0.7
+0.6
+0.4
+1.0
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ABZR88_RS14325
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