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Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS14170 and ABZR88_RS14175 are separated by 439 nucleotides
ABZR88_RS14175 and ABZR88_RS14180 are separated by 17 nucleotides
ABZR88_RS14180 and ABZR88_RS14185 are separated by 54 nucleotides
ABZR88_RS14185 and ABZR88_RS14190 overlap by 14 nucleotides
ABZR88_RS14170: ABZR88_RS14170 - AraC family transcriptional regulator, at 3,517,845 to 3,518,702
_RS14170
ABZR88_RS14175: ABZR88_RS14175 - TonB-dependent receptor, at 3,519,142 to 3,522,150
_RS14175
ABZR88_RS14180: ABZR88_RS14180 - RagB/SusD family nutrient uptake outer membrane protein, at 3,522,168 to 3,523,802
_RS14180
ABZR88_RS14185: ABZR88_RS14185 - PAS domain S-box protein, at 3,523,857 to 3,526,511
_RS14185
ABZR88_RS14190: ABZR88_RS14190 - FIST signal transduction protein, at 3,526,498 to 3,527,643
_RS14190
Group
Condition
ABZR88
_RS14170
ABZR88
_RS14175
ABZR88
_RS14180
ABZR88
_RS14185
ABZR88
_RS14190
motility_chemotaxis
R2A motility; outer cut
+0.0
-0.1
+0.0
-0.2
-0.3
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.0
-0.2
-0.4
+0.0
+0.0
stress
R2A with Apigenin 50 ug/ml
-0.2
-0.0
-0.1
-0.1
+0.0
carbon source
D-Xylose (C)
+0.0
-0.1
-0.0
-0.1
-0.2
stress
Erythromycin stress 0.05 mg/ml
-0.1
-0.0
-0.0
-0.2
-0.1
motility_chemotaxis
R2A motility; outer cut
-0.0
-0.0
-0.2
-0.2
+0.2
motility_chemotaxis
R2A motility; outer cut
-0.2
-0.1
-0.2
+0.3
+0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.1
-0.0
-0.2
-0.0
+0.2
stress
R2A_low_K2HPO4
+0.2
-0.1
-0.1
-0.1
-0.1
no stress control
R2A no stress control
+0.3
-0.0
-0.1
-0.4
+0.2
temperature
R2A 30C
+0.2
-0.0
-0.2
-0.1
+0.1
temperature
R2A 21C
+0.1
+0.0
-0.1
-0.1
+0.2
temperature
R2A 15C; 72 hours
-0.1
+0.0
-0.1
+0.0
+0.3
carbon source
L-Rhamnose (C)
-0.2
+0.0
-0.0
-0.0
+0.3
carbon source
D-Maltose (C)
+0.0
-0.0
-0.0
-0.1
+0.3
temperature
R2A 15C; 72 hours
-0.1
-0.1
-0.0
+0.1
+0.4
carbon source
D-Maltose (C)
-0.0
+0.1
-0.1
+0.1
+0.2
carbon source
L-Arabinose (C)
+0.2
-0.1
+0.0
+0.0
+0.1
temperature
R2A 15C; 144 hours
+0.1
-0.1
-0.1
+0.1
+0.3
stress
Kanamycin sulfate stress 0.05 mg/ml
+0.1
+0.0
-0.0
-0.1
+0.3
carbon source
L-Rhamnose (C)
+0.4
-0.0
+0.0
-0.1
+0.1
stress
R2A_low_K2HPO4
+0.2
+0.0
+0.1
+0.0
+0.1
carbon source
Starch (C)
+0.2
-0.0
-0.0
+0.0
+0.3
carbon source
Pullulan (C)
-0.0
+0.2
+0.1
+0.0
+0.3
carbon source
Starch (C)
+0.2
+0.1
-0.0
+0.2
+0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.1
+0.1
+0.1
-0.1
+0.4
carbon source
Beta-Lactose (C)
+0.2
+0.0
+0.0
+0.0
+0.4
carbon source
alginate (C)
+0.1
+0.1
+0.1
+0.2
+0.3
carbon source
alginate (C)
+0.1
+0.1
+0.1
+0.3
+0.3
carbon source
Pullulan (C)
+0.2
-0.0
+0.2
+0.3
+0.3
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