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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS13660 and ABZR88_RS13665 are separated by 112 nucleotides
ABZR88_RS13665 and ABZR88_RS13670 are separated by 231 nucleotides
ABZR88_RS13670 and ABZR88_RS13675 are separated by 19 nucleotides
ABZR88_RS13675 and ABZR88_RS13680 are separated by 40 nucleotides
ABZR88_RS13660: ABZR88_RS13660 - PorP/SprF family type IX secretion system membrane protein, at 3,422,237 to 3,423,160
_RS13660
ABZR88_RS13665: ABZR88_RS13665 - phosphatase PAP2 family protein, at 3,423,273 to 3,424,091
_RS13665
ABZR88_RS13670: ABZR88_RS13670 - nuclear transport factor 2 family protein, at 3,424,323 to 3,424,751
_RS13670
ABZR88_RS13675: ABZR88_RS13675 - carboxymuconolactone decarboxylase family protein, at 3,424,771 to 3,425,310
_RS13675
ABZR88_RS13680: ABZR88_RS13680 - DUF417 family protein, at 3,425,351 to 3,425,920
_RS13680
Group
Condition
ABZR88
_RS13660
ABZR88
_RS13665
ABZR88
_RS13670
ABZR88
_RS13675
ABZR88
_RS13680
no stress control
R2A no stress control
-0.3
-0.1
+0.1
-1.0
+0.0
temperature
R2A 15C; 144 hours
-0.3
-0.2
-0.2
-0.4
-0.2
temperature
R2A 30C; 144 hours
-0.3
-0.4
-0.0
-0.3
-0.2
carbon source
D-Maltose (C)
-0.3
-0.3
-0.2
-0.5
+0.1
stress
Erythromycin stress 0.05 mg/ml
-0.1
-0.2
-0.0
-0.3
-0.3
carbon source
L-Arabinose (C)
-0.2
-0.1
-0.3
-0.3
-0.2
stress
Erythromycin stress 0.05 mg/ml
-0.1
-0.3
-0.0
+0.0
-0.4
carbon source
D-Xylose (C)
-0.1
-0.4
-0.3
-0.1
-0.2
carbon source
Pullulan (C)
-0.2
-0.3
-0.1
-0.3
-0.0
temperature
R2A 15C; 72 hours
-0.2
-0.1
-0.1
-0.3
-0.1
motility_chemotaxis
R2A motility; outer cut
-0.1
+0.6
-0.3
-0.3
-0.7
carbon source
Beta-Lactose (C)
-0.0
-0.4
-0.1
-0.1
-0.3
temperature
R2A 15C; 144 hours
-0.4
-0.4
-0.2
+0.1
+0.0
carbon source
D-Glucose (C)
-0.0
-0.2
+0.1
-0.4
-0.1
motility_chemotaxis
R2A motility; outer cut
+0.1
+0.1
+0.0
-0.7
-0.2
carbon source
D-Maltose (C)
-0.2
-0.1
+0.1
-0.3
-0.0
stress
potassium fluoride stress 30 mM
-0.1
-0.1
+0.0
-0.3
-0.1
temperature
R2A 15C; 72 hours
-0.2
-0.2
-0.1
-0.2
+0.1
stress
R2A_high_K2HPO4
-0.2
-0.3
-0.0
+0.1
-0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
-0.2
-0.2
-0.3
+0.2
-0.1
carbon source
L-Arabinose (C)
+0.3
-0.1
+0.0
-0.4
-0.3
stress
Kanamycin sulfate stress 0.05 mg/ml
-0.3
-0.1
-0.1
+0.2
-0.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
-0.0
-0.3
-0.1
+0.2
-0.2
temperature
R2A 21C
+0.1
-0.3
-0.2
+0.1
-0.1
carbon source
alginate (C)
-0.0
-0.1
-0.2
+0.2
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.5
-0.1
+0.1
-0.1
+0.3
motility_chemotaxis
R2A motility; outer cut
-0.2
-0.3
-0.2
+0.4
+0.0
carbon source
D-Glucose (C)
-0.1
-0.2
-0.2
+0.2
-0.0
stress
copper (II) chloride stress 1 mM
-0.1
-0.2
-0.1
+0.4
-0.2
motility_chemotaxis
R2A motility; outer cut
-0.3
-0.0
-0.1
+0.3
+0.1
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