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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS11495 and ABZR88_RS11500 are separated by 43 nucleotides
ABZR88_RS11500 and ABZR88_RS11505 are separated by 216 nucleotides
ABZR88_RS11505 and ABZR88_RS11510 are separated by 116 nucleotides
ABZR88_RS11510 and ABZR88_RS11515 are separated by 736 nucleotides
ABZR88_RS11495: ABZR88_RS11495 - SDR family oxidoreductase, at 2,828,262 to 2,829,002
_RS11495
ABZR88_RS11500: ABZR88_RS11500 - DHA2 family efflux MFS transporter permease subunit, at 2,829,046 to 2,830,593
_RS11500
ABZR88_RS11505: ABZR88_RS11505 - hypothetical protein, at 2,830,810 to 2,833,548
_RS11505
ABZR88_RS11510: ABZR88_RS11510 - hypothetical protein, at 2,833,665 to 2,834,294
_RS11510
ABZR88_RS11515: ABZR88_RS11515 - PAS domain S-box protein, at 2,835,031 to 2,838,183
_RS11515
Group
Condition
ABZR88
_RS11495
ABZR88
_RS11500
ABZR88
_RS11505
ABZR88
_RS11510
ABZR88
_RS11515
motility_chemotaxis
R2A motility; outer cut
-0.4
-0.2
-0.0
-0.4
+0.1
stress
Erythromycin stress 0.05 mg/ml
-0.2
-0.1
-0.3
-0.2
+0.1
no stress control
R2A no stress control
-0.5
+0.3
+0.0
-0.4
+0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.6
-0.1
-0.0
+0.2
+0.2
stress
Erythromycin stress 0.05 mg/ml
-0.3
+0.0
-0.3
+0.3
+0.1
stress
Quercetin stress 0.05 mg/ml
-0.2
-0.3
+0.1
+0.1
+0.1
motility_chemotaxis
R2A motility; outer cut
+0.3
-0.2
+0.1
-0.3
+0.1
stress
R2A with Apigenin 50 ug/ml
-0.3
+0.1
+0.2
-0.2
+0.3
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.3
-0.1
+0.2
+0.1
+0.3
temperature
R2A 15C; 72 hours
-0.3
-0.1
+0.2
-0.1
+0.4
stress
copper (II) chloride stress 1 mM
-0.3
+0.0
+0.2
+0.1
+0.2
stress
copper (II) chloride stress 1 mM
-0.3
+0.0
+0.2
-0.0
+0.3
carbon source
D-Maltose (C)
+0.2
-0.3
+0.1
+0.2
+0.1
temperature
R2A 15C; 144 hours
-0.3
+0.0
+0.2
+0.0
+0.4
temperature
R2A 15C; 144 hours
-0.1
-0.3
+0.2
+0.1
+0.4
temperature
R2A 30C
+0.0
-0.1
+0.1
+0.3
+0.1
carbon source
Pullulan (C)
-0.0
-0.2
+0.2
+0.2
+0.3
carbon source
alginate (C)
+0.1
-0.2
+0.2
+0.2
+0.1
carbon source
Melibiose (C)
-0.4
+0.3
+0.3
+0.1
+0.2
temperature
R2A 30C; 144 hours
-0.1
-0.2
+0.3
+0.2
+0.4
carbon source
D-Maltose (C)
+0.0
-0.1
+0.2
+0.4
+0.1
carbon source
Pullulan (C)
+0.0
-0.1
+0.2
+0.3
+0.2
temperature
R2A 15C; 72 hours
-0.0
-0.1
+0.1
+0.2
+0.4
carbon source
Starch (C)
+0.2
-0.1
+0.2
+0.3
+0.0
carbon source
Beta-Lactose (C)
+0.2
-0.1
+0.3
+0.1
+0.1
carbon source
L-Arabinose (C)
+0.1
-0.3
+0.4
+0.3
+0.1
carbon source
Beta-Lactose (C)
+0.3
-0.2
+0.3
+0.3
+0.2
carbon source
Pullulan (C)
+0.2
+0.0
+0.1
+0.3
+0.2
carbon source
Melibiose (C)
-0.2
+0.3
+0.2
+0.7
-0.0
stress
Trimethoprim stress 0.05 mg/ml
+0.2
+0.3
+0.0
+0.3
+0.2
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