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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS10985 and ABZR88_RS10990 are separated by 25 nucleotides
ABZR88_RS10990 and ABZR88_RS10995 are separated by 48 nucleotides
ABZR88_RS10995 and ABZR88_RS11000 overlap by 37 nucleotides
ABZR88_RS11000 and ABZR88_RS11005 are separated by 560 nucleotides
ABZR88_RS10985: ABZR88_RS10985 - hypothetical protein, at 2,676,993 to 2,677,544
_RS10985
ABZR88_RS10990: ABZR88_RS10990 - hypothetical protein, at 2,677,570 to 2,677,824
_RS10990
ABZR88_RS10995: ABZR88_RS10995 - DUF932 domain-containing protein, at 2,677,873 to 2,678,616
_RS10995
ABZR88_RS11000: ABZR88_RS11000 - reverse transcriptase/maturase family protein, at 2,678,580 to 2,680,394
_RS11000
ABZR88_RS11005: ABZR88_RS11005 - DUF932 domain-containing protein, at 2,680,955 to 2,681,401
_RS11005
Group
Condition
ABZR88
_RS10985
ABZR88
_RS10990
ABZR88
_RS10995
ABZR88
_RS11000
ABZR88
_RS11005
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.5
-0.6
-0.2
N.D.
-0.6
carbon source
alginate (C)
-1.1
-0.6
+0.1
N.D.
-0.3
motility_chemotaxis
R2A motility; outer cut
-0.6
-1.0
-0.0
N.D.
-0.2
stress
Erythromycin stress 0.05 mg/ml
-1.0
-0.4
-0.2
N.D.
-0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.5
-0.6
-0.2
N.D.
-0.5
stress
Erythromycin stress 0.05 mg/ml
-0.6
-0.6
-0.3
N.D.
-0.3
carbon source
Starch (C)
-0.5
-0.6
-0.2
N.D.
-0.3
carbon source
Beta-Lactose (C)
-0.8
-0.5
-0.1
N.D.
-0.3
temperature
R2A 30C; 144 hours
-0.5
-0.4
-0.2
N.D.
-0.4
carbon source
Pullulan (C)
-0.6
-0.6
-0.0
N.D.
-0.2
carbon source
D-Xylose (C)
-0.5
-0.4
-0.2
N.D.
-0.3
temperature
R2A 15C; 144 hours
-0.8
-0.3
+0.0
N.D.
-0.3
carbon source
D-Maltose (C)
-0.5
-0.6
+0.1
N.D.
-0.4
carbon source
alginate (C)
-0.7
-0.3
-0.1
N.D.
-0.3
carbon source
D-Xylose (C)
-0.4
-0.5
-0.2
N.D.
-0.2
carbon source
D-Maltose (C)
-0.2
-0.4
-0.2
N.D.
-0.5
carbon source
Melibiose (C)
-0.7
-0.4
-0.0
N.D.
-0.1
motility_chemotaxis
R2A motility; outer cut
-0.7
-0.6
+0.1
N.D.
+0.0
stress
R2A_low_K2HPO4
-0.3
-0.6
-0.1
N.D.
-0.2
stress
copper (II) chloride stress 1 mM
-0.4
-0.4
-0.1
N.D.
-0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
-0.5
-0.4
-0.0
N.D.
-0.2
carbon source
Starch (C)
-0.6
-0.1
-0.0
N.D.
-0.4
stress
copper (II) chloride stress 1 mM
-0.1
-0.3
-0.2
N.D.
-0.4
temperature
R2A 15C; 72 hours
-0.3
-0.1
-0.2
N.D.
-0.4
carbon source
D-Glucose (C)
-0.2
-0.5
-0.2
N.D.
-0.1
stress
R2A_high_K2HPO4
-0.4
-0.3
-0.1
N.D.
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.4
-0.4
-0.2
N.D.
-0.3
no stress control
R2A no stress control
-0.1
+0.4
-0.5
N.D.
-0.3
motility_chemotaxis
R2A motility; outer cut
+0.7
-0.7
+0.3
N.D.
-0.2
motility_chemotaxis
R2A motility; outer cut
+1.2
+0.7
-0.2
N.D.
-0.2
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