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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS09735 and ABZR88_RS09740 are separated by 37 nucleotides
ABZR88_RS09740 and ABZR88_RS09745 are separated by 16 nucleotides
ABZR88_RS09745 and ABZR88_RS09750 are separated by 64 nucleotides
ABZR88_RS09750 and ABZR88_RS09755 are separated by 22 nucleotides
ABZR88_RS09735: ABZR88_RS09735 - pectinesterase family protein, at 2,427,171 to 2,428,205
_RS09735
ABZR88_RS09740: ABZR88_RS09740 - hypothetical protein, at 2,428,243 to 2,428,620
_RS09740
ABZR88_RS09745: ABZR88_RS09745 - DUF5655 domain-containing protein, at 2,428,637 to 2,429,002
_RS09745
ABZR88_RS09750: ABZR88_RS09750 - class 1 fructose-bisphosphatase, at 2,429,067 to 2,430,116
_RS09750
ABZR88_RS09755: ABZR88_RS09755 - metallophosphoesterase, at 2,430,139 to 2,430,630
_RS09755
Group
Condition
ABZR88
_RS09735
ABZR88
_RS09740
ABZR88
_RS09745
ABZR88
_RS09750
ABZR88
_RS09755
no stress control
R2A no stress control
+0.1
-0.3
-0.9
-0.1
+0.3
carbon source
D-Fructose (C)
-0.1
-0.1
-0.2
+0.0
+0.3
motility_chemotaxis
R2A motility; outer cut
+0.2
-0.3
+0.0
+0.1
+0.1
motility_chemotaxis
R2A motility; outer cut
-0.0
-0.0
-0.1
-0.0
+0.4
temperature
R2A 15C; 144 hours
+0.1
+0.1
-0.2
+0.1
+0.2
carbon source
D-Glucose (C)
-0.1
-0.0
-0.1
+0.1
+0.5
motility_chemotaxis
R2A motility; outer cut
+0.3
-0.0
-0.1
+0.2
+0.1
stress
potassium fluoride stress 30 mM
+0.1
-0.1
-0.1
+0.0
+0.6
stress
R2A_low_K2HPO4
+0.0
+0.1
-0.1
+0.1
+0.3
carbon source
L-Rhamnose (C)
+0.1
+0.0
-0.1
+0.4
+0.1
carbon source
Starch (C)
-0.0
+0.2
-0.0
+0.1
+0.3
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.2
-0.0
+0.2
+0.2
+0.0
stress
R2A with Apigenin 50 ug/ml
+0.1
+0.0
+0.2
-0.0
+0.3
carbon source
Pullulan (C)
+0.0
+0.3
+0.1
+0.3
+0.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.0
+0.2
+0.2
+0.3
-0.0
carbon source
alginate (C)
-0.1
+0.1
+0.2
+0.1
+0.3
stress
R2A_high_K2HPO4
-0.0
+0.0
+0.1
+0.1
+0.5
carbon source
Starch (C)
+0.0
+0.3
+0.2
+0.1
+0.2
temperature
R2A 15C; 72 hours
+0.2
+0.2
-0.0
+0.1
+0.3
temperature
R2A 30C
+0.1
+0.0
+0.0
+0.1
+0.5
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.0
+0.2
+0.4
+0.0
+0.1
carbon source
L-Arabinose (C)
+0.0
+0.2
+0.3
+0.2
+0.1
carbon source
alginate (C)
+0.1
+0.2
+0.1
+0.2
+0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.3
+0.0
-0.0
+0.1
+0.6
temperature
R2A 30C; 144 hours
+0.2
+0.2
+0.1
+0.2
+0.3
carbon source
L-Rhamnose (C)
+0.1
+0.1
-0.1
+0.7
+0.1
carbon source
Beta-Lactose (C)
+0.1
+0.2
+0.1
+0.1
+0.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days
+0.1
+0.2
+0.1
+0.2
+0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.1
+0.1
+0.3
+0.3
+0.2
carbon source
L-Arabinose (C)
-0.0
+0.3
+0.4
-0.1
+0.4
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