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Cofit
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS09710 and ABZR88_RS09715 are separated by 38 nucleotides
ABZR88_RS09715 and ABZR88_RS09720 are separated by 51 nucleotides
ABZR88_RS09720 and ABZR88_RS09725 are separated by 243 nucleotides
ABZR88_RS09725 and ABZR88_RS09730 are separated by 193 nucleotides
ABZR88_RS09710: ABZR88_RS09710 - hypothetical protein, at 2,424,037 to 2,424,567
_RS09710
ABZR88_RS09715: ABZR88_RS09715 - site-specific integrase, at 2,424,606 to 2,425,775
_RS09715
ABZR88_RS09720: ABZR88_RS09720 - tRNA-His, at 2,425,827 to 2,425,900
_RS09720
ABZR88_RS09725: ABZR88_RS09725 - DUF6252 family protein, at 2,426,144 to 2,426,605
_RS09725
ABZR88_RS09730: ABZR88_RS09730 - hypothetical protein, at 2,426,799 to 2,427,146
_RS09730
Group
Condition
ABZR88
_RS09710
ABZR88
_RS09715
ABZR88
_RS09720
ABZR88
_RS09725
ABZR88
_RS09730
carbon source
Melibiose (C)
+0.0
+0.1
N.D.
+0.1
-1.0
carbon source
Melibiose (C)
-0.1
+0.1
N.D.
-0.1
-0.6
carbon source
Beta-Lactose (C)
+0.1
+0.0
N.D.
-0.1
-0.4
no stress control
R2A no stress control
-0.1
+0.4
N.D.
+0.3
-1.0
carbon source
Starch (C)
+0.1
-0.0
N.D.
-0.2
-0.3
carbon source
D-Glucose (C)
-0.2
+0.1
N.D.
-0.2
-0.1
carbon source
L-Rhamnose (C)
-0.2
+0.2
N.D.
-0.2
-0.2
carbon source
Pullulan (C)
+0.1
+0.1
N.D.
-0.3
+0.2
stress
Quercetin stress 0.05 mg/ml
-0.0
+0.1
N.D.
-0.3
+0.4
stress
Esculin Monohydrate stress 5 mM
-0.1
+0.0
N.D.
-0.1
+0.4
stress
Kanamycin sulfate stress 0.05 mg/ml
-0.2
+0.1
N.D.
+0.2
+0.3
carbon source
L-Rhamnose (C)
+0.5
-0.1
N.D.
-0.1
+0.0
carbon source
D-Glucose (C)
+0.3
+0.0
N.D.
-0.3
+0.4
motility_chemotaxis
R2A motility; outer cut
+0.4
+0.1
N.D.
-0.2
+0.2
carbon source
Beta-Lactose (C)
+0.2
-0.0
N.D.
-0.1
+0.4
stress
Quercetin stress 0.05 mg/ml
+0.2
-0.1
N.D.
-0.2
+0.5
stress
R2A with Apigenin 50 ug/ml
+0.4
+0.2
N.D.
-0.0
-0.1
stress
Trimethoprim stress 0.05 mg/ml
+0.3
-0.1
N.D.
+0.3
+0.0
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.0
+0.1
N.D.
-0.1
+0.4
carbon source
L-Arabinose (C)
-0.0
+0.1
N.D.
-0.1
+0.6
temperature
R2A 30C; 144 hours
+0.4
+0.3
N.D.
-0.0
-0.1
stress
Erythromycin stress 0.05 mg/ml
+0.0
-0.1
N.D.
+0.3
+0.3
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.1
+0.2
N.D.
-0.1
+0.4
temperature
R2A 21C
+0.2
+0.1
N.D.
+0.1
+0.2
motility_chemotaxis
R2A motility; outer cut
+0.4
-0.1
N.D.
-0.0
+0.5
temperature
R2A 15C; 72 hours
+0.3
+0.2
N.D.
-0.1
+0.2
carbon source
Pullulan (C)
+0.0
+0.1
N.D.
+0.2
+0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.3
+0.1
N.D.
+0.2
+0.2
temperature
R2A 30C
+0.4
+0.1
N.D.
+0.2
+0.5
motility_chemotaxis
R2A motility; outer cut
-0.0
+0.2
N.D.
-0.1
+1.4
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