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Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS08780 and ABZR88_RS08785 are separated by 737 nucleotides
ABZR88_RS08785 and ABZR88_RS08790 are separated by 11 nucleotides
ABZR88_RS08790 and ABZR88_RS08795 are separated by 329 nucleotides
ABZR88_RS08795 and ABZR88_RS08800 are separated by 233 nucleotides
ABZR88_RS08780: ABZR88_RS08780 - hybrid sensor histidine kinase/response regulator transcription factor, at 2,205,277 to 2,209,422
_RS08780
ABZR88_RS08785: ABZR88_RS08785 - TonB-dependent receptor, at 2,210,160 to 2,213,222
_RS08785
ABZR88_RS08790: ABZR88_RS08790 - RagB/SusD family nutrient uptake outer membrane protein, at 2,213,234 to 2,215,213
_RS08790
ABZR88_RS08795: ABZR88_RS08795 - beta-galactosidase GalB, at 2,215,543 to 2,218,326
_RS08795
ABZR88_RS08800: ABZR88_RS08800 - glycoside hydrolase 43 family protein, at 2,218,560 to 2,220,110
_RS08800
Group
Condition
ABZR88
_RS08780
ABZR88
_RS08785
ABZR88
_RS08790
ABZR88
_RS08795
ABZR88
_RS08800
no stress control
R2A no stress control
-0.0
-0.1
-0.4
-0.3
-0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.0
+0.0
-0.3
-0.2
-0.1
carbon source
Pullulan (C)
-0.2
-0.0
-0.1
-0.1
-0.0
stress
Esculin Monohydrate stress 5 mM
-0.0
-0.0
-0.1
-0.2
-0.1
carbon source
L-Rhamnose (C)
-0.0
-0.1
-0.0
-0.3
+0.0
stress
R2A with Apigenin 50 ug/ml
-0.0
-0.0
-0.1
-0.1
-0.2
carbon source
D-Xylose (C)
+0.0
+0.0
-0.2
-0.2
-0.0
stress
R2A_high_K2HPO4
+0.0
-0.0
-0.2
-0.1
-0.1
stress
Kanamycin sulfate stress 0.05 mg/ml
+0.0
-0.1
-0.1
-0.2
-0.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days
-0.0
-0.0
-0.2
-0.2
+0.1
carbon source
D-Glucose (C)
+0.0
+0.0
-0.2
-0.1
-0.0
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.0
-0.0
-0.1
-0.2
+0.0
stress
R2A_high_K2HPO4
+0.0
+0.1
-0.2
-0.1
-0.1
carbon source
L-Rhamnose (C)
+0.1
-0.1
-0.1
-0.1
-0.1
temperature
R2A 30C
+0.0
+0.0
-0.2
-0.1
-0.1
carbon source
D-Fructose (C)
+0.0
-0.0
-0.2
-0.1
+0.0
stress
R2A_low_K2HPO4
+0.0
-0.0
-0.1
-0.2
+0.0
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.1
-0.0
+0.0
-0.1
-0.1
motility_chemotaxis
R2A motility; outer cut
+0.0
-0.1
-0.2
+0.2
-0.0
carbon source
Melibiose (C)
+0.0
-0.1
-0.1
+0.1
-0.0
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.1
+0.0
-0.0
-0.2
-0.1
stress
potassium fluoride stress 30 mM
+0.1
+0.1
-0.0
-0.2
-0.0
stress
Quercetin stress 0.05 mg/ml
+0.1
+0.1
-0.1
-0.1
+0.1
stress
Trimethoprim stress 0.05 mg/ml
-0.1
+0.1
+0.3
-0.1
-0.1
temperature
R2A 15C; 144 hours
+0.1
+0.1
-0.0
-0.1
+0.1
stress
NaCl stress 100 mM
+0.0
+0.0
-0.0
-0.1
+0.2
temperature
R2A 15C; 72 hours
+0.1
+0.2
-0.1
-0.0
+0.2
carbon source
Pullulan (C)
+0.1
+0.2
+0.2
-0.1
+0.1
temperature
R2A 15C; 72 hours
+0.1
+0.2
-0.0
-0.0
+0.2
motility_chemotaxis
R2A motility; outer cut
+0.0
+0.0
+0.6
+0.1
-0.1
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