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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS07730 and ABZR88_RS07735 are separated by 235 nucleotides
ABZR88_RS07735 and ABZR88_RS07740 are separated by 241 nucleotides
ABZR88_RS07740 and ABZR88_RS07745 are separated by 76 nucleotides
ABZR88_RS07745 and ABZR88_RS07750 are separated by 305 nucleotides
ABZR88_RS07730: ABZR88_RS07730 - c-type cytochrome, at 1,931,294 to 1,931,737
_RS07730
ABZR88_RS07735: ABZR88_RS07735 - M48 family metallopeptidase, at 1,931,973 to 1,932,491
_RS07735
ABZR88_RS07740: ABZR88_RS07740 - 2'-5' RNA ligase family protein, at 1,932,733 to 1,933,287
_RS07740
ABZR88_RS07745: ABZR88_RS07745 - DNA polymerase IV, at 1,933,364 to 1,934,551
_RS07745
ABZR88_RS07750: ABZR88_RS07750 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,934,857 to 1,936,164
_RS07750
Group
Condition
ABZR88
_RS07730
ABZR88
_RS07735
ABZR88
_RS07740
ABZR88
_RS07745
ABZR88
_RS07750
no stress control
R2A no stress control
-0.3
-1.1
+0.3
-0.1
N.D.
stress
potassium fluoride stress 30 mM
-0.3
-0.2
-0.4
-0.0
N.D.
stress
potassium fluoride stress 30 mM
-0.3
+0.1
-0.6
-0.0
N.D.
carbon source
Melibiose (C)
-0.4
-0.2
-0.3
+0.1
N.D.
carbon source
D-Fructose (C)
-0.1
-0.2
-0.6
+0.0
N.D.
stress
R2A_low_K2HPO4
-0.2
-0.2
-0.3
-0.1
N.D.
carbon source
D-Xylose (C)
-0.2
-0.3
-0.2
-0.0
N.D.
stress
Kanamycin sulfate stress 0.05 mg/ml
-0.0
-0.0
-0.4
-0.2
N.D.
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.3
-0.3
-0.2
+0.1
N.D.
stress
Kanamycin sulfate stress 0.05 mg/ml
-0.1
-0.2
-0.4
+0.0
N.D.
temperature
R2A 21C
-0.2
-0.2
-0.2
-0.0
N.D.
stress
copper (II) chloride stress 1 mM
+0.0
-0.2
-0.4
+0.1
N.D.
stress
R2A_low_K2HPO4
-0.1
-0.2
-0.3
+0.1
N.D.
carbon source
D-Glucose (C)
+0.1
-0.2
-0.3
-0.1
N.D.
stress
copper (II) chloride stress 1 mM
-0.1
-0.1
-0.4
+0.1
N.D.
temperature
R2A 15C; 144 hours
-0.2
-0.5
-0.0
+0.2
N.D.
carbon source
Beta-Lactose (C)
+0.2
-0.2
-0.3
-0.2
N.D.
carbon source
D-Glucose (C)
-0.2
-0.1
-0.3
+0.1
N.D.
carbon source
Beta-Lactose (C)
+0.2
-0.1
-0.5
+0.1
N.D.
temperature
R2A 15C; 144 hours
-0.0
-0.3
-0.1
+0.2
N.D.
carbon source
L-Arabinose (C)
+0.1
-0.1
-0.3
+0.1
N.D.
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.3
+0.2
+0.2
+0.0
N.D.
stress
Erythromycin stress 0.05 mg/ml
+0.1
-0.0
-0.2
+0.2
N.D.
carbon source
L-Rhamnose (C)
+0.3
-0.1
-0.1
+0.1
N.D.
carbon source
L-Rhamnose (C)
+0.2
+0.2
-0.4
+0.2
N.D.
stress
R2A with Apigenin 50 ug/ml
+0.1
-0.3
+0.3
+0.3
N.D.
temperature
R2A 15C; 72 hours
+0.1
-0.1
+0.1
+0.3
N.D.
motility_chemotaxis
R2A motility; outer cut
-0.1
+0.2
+0.2
+0.5
N.D.
motility_chemotaxis
R2A motility; outer cut
+0.1
+0.4
-0.1
+0.5
N.D.
temperature
R2A 30C; 144 hours
+0.4
+0.2
+0.1
+0.5
N.D.
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