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Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS07310 and ABZR88_RS07315 are separated by 88 nucleotides
ABZR88_RS07315 and ABZR88_RS07320 are separated by 19 nucleotides
ABZR88_RS07320 and ABZR88_RS07325 are separated by 32 nucleotides
ABZR88_RS07325 and ABZR88_RS07330 are separated by 8 nucleotides
ABZR88_RS07310: ABZR88_RS07310 - glycoside hydrolase family 28 protein, at 1,815,384 to 1,817,042
_RS07310
ABZR88_RS07315: ABZR88_RS07315 - RagB/SusD family nutrient uptake outer membrane protein, at 1,817,131 to 1,818,858
_RS07315
ABZR88_RS07320: ABZR88_RS07320 - TonB-dependent receptor, at 1,818,878 to 1,821,943
_RS07320
ABZR88_RS07325: ABZR88_RS07325 - RagB/SusD family nutrient uptake outer membrane protein, at 1,821,976 to 1,823,682
_RS07325
ABZR88_RS07330: ABZR88_RS07330 - TonB-dependent receptor, at 1,823,691 to 1,826,846
_RS07330
Group
Condition
ABZR88
_RS07310
ABZR88
_RS07315
ABZR88
_RS07320
ABZR88
_RS07325
ABZR88
_RS07330
temperature
R2A 30C; 144 hours
-0.2
-0.3
-0.2
-0.2
-0.3
no stress control
R2A no stress control
-0.2
-0.1
+0.2
-0.3
-0.3
temperature
R2A 15C; 72 hours
-0.2
-0.5
-0.1
+0.1
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.1
-0.1
+0.1
-0.3
-0.2
stress
R2A with Apigenin 50 ug/ml
-0.1
-0.2
-0.1
-0.0
-0.2
carbon source
D-Xylose (C)
-0.1
-0.3
-0.1
+0.1
-0.2
carbon source
D-Xylose (C)
-0.2
-0.2
-0.1
-0.0
-0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.0
-0.3
-0.1
-0.0
-0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
-0.0
-0.2
-0.2
-0.0
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.1
-0.2
-0.1
+0.1
-0.2
temperature
R2A 15C; 144 hours
-0.1
-0.3
-0.1
+0.0
+0.0
carbon source
D-Glucose (C)
-0.0
-0.2
-0.1
-0.0
-0.1
carbon source
alginate (C)
-0.0
-0.3
-0.0
-0.0
-0.1
stress
Esculin Monohydrate stress 5 mM
-0.1
-0.2
-0.0
+0.0
-0.1
stress
Erythromycin stress 0.05 mg/ml
-0.0
-0.1
+0.1
-0.0
-0.2
stress
copper (II) chloride stress 1 mM
-0.1
-0.2
+0.1
-0.0
-0.1
stress
R2A_low_K2HPO4
-0.1
-0.1
-0.1
+0.1
-0.1
stress
Quercetin stress 0.05 mg/ml
-0.1
-0.1
-0.0
+0.1
-0.1
motility_chemotaxis
R2A motility; outer cut
-0.2
-0.1
-0.0
+0.1
-0.0
motility_chemotaxis
R2A motility; outer cut
-0.2
-0.2
-0.1
+0.1
+0.1
temperature
R2A 15C; 144 hours
+0.0
-0.3
-0.0
+0.1
-0.0
carbon source
Pullulan (C)
+0.1
-0.3
-0.2
+0.1
+0.1
temperature
R2A 15C; 72 hours
-0.1
-0.3
+0.0
+0.3
-0.0
stress
Erythromycin stress 0.05 mg/ml
-0.1
-0.2
+0.2
-0.0
-0.1
motility_chemotaxis
R2A motility; outer cut
-0.1
-0.0
-0.1
+0.2
-0.1
motility_chemotaxis
R2A motility; outer cut
-0.2
-0.1
-0.1
+0.3
+0.0
temperature
R2A 30C
+0.1
-0.2
+0.1
+0.1
-0.1
carbon source
L-Rhamnose (C)
+0.0
-0.1
+0.1
+0.1
-0.1
carbon source
D-Fructose (C)
+0.1
-0.1
+0.0
+0.1
-0.1
carbon source
L-Rhamnose (C)
-0.1
+0.2
+0.0
+0.0
-0.1
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ABZR88_RS07320
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