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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS05895 and ABZR88_RS05900 are separated by 199 nucleotides
ABZR88_RS05900 and ABZR88_RS05905 are separated by 227 nucleotides
ABZR88_RS05905 and ABZR88_RS05910 are separated by 18 nucleotides
ABZR88_RS05910 and ABZR88_RS05915 are separated by 185 nucleotides
ABZR88_RS05895: ABZR88_RS05895 - helix-turn-helix domain-containing protein, at 1,437,594 to 1,437,920
_RS05895
ABZR88_RS05900: ABZR88_RS05900 - hypothetical protein, at 1,438,120 to 1,438,506
_RS05900
ABZR88_RS05905: ABZR88_RS05905 - MFS transporter, at 1,438,734 to 1,440,053
_RS05905
ABZR88_RS05910: ABZR88_RS05910 - (Fe-S)-binding protein, at 1,440,072 to 1,440,800
_RS05910
ABZR88_RS05915: ABZR88_RS05915 - hypothetical protein, at 1,440,986 to 1,441,315
_RS05915
Group
Condition
ABZR88
_RS05895
ABZR88
_RS05900
ABZR88
_RS05905
ABZR88
_RS05910
ABZR88
_RS05915
stress
Erythromycin stress 0.05 mg/ml
-0.2
-0.4
+0.1
-0.0
-0.2
carbon source
L-Arabinose (C)
-0.0
-0.2
-0.0
-0.5
+0.2
stress
Erythromycin stress 0.05 mg/ml
-0.3
-0.5
+0.0
-0.0
+0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.6
-0.5
+0.2
+0.6
-0.2
carbon source
L-Arabinose (C)
+0.2
-0.2
+0.0
-0.5
+0.1
stress
R2A with Apigenin 50 ug/ml
-0.6
+0.2
+0.2
+0.1
-0.2
stress
Trimethoprim stress 0.05 mg/ml
-0.7
+0.1
-0.1
-0.1
+0.6
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.1
+0.2
+0.1
-0.3
-0.3
carbon source
D-Xylose (C)
-0.4
+0.2
+0.3
-0.3
+0.0
carbon source
D-Xylose (C)
-0.6
+0.3
+0.3
+0.1
-0.2
stress
R2A_low_K2HPO4
-0.2
+0.1
+0.2
+0.0
-0.4
carbon source
alginate (C)
-0.6
+0.2
+0.4
-0.0
-0.0
stress
NaCl stress 100 mM
-0.4
+0.2
+0.1
-0.1
+0.3
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.4
+0.1
+0.1
+0.5
-0.2
no stress control
R2A no stress control
-0.3
-0.3
-0.0
+0.2
+0.5
carbon source
Melibiose (C)
-0.0
+0.1
+0.3
-0.4
+0.2
carbon source
D-Glucose (C)
-0.4
+0.2
+0.1
+0.2
+0.1
temperature
R2A 15C; 72 hours
+0.4
-0.0
+0.1
+0.1
-0.2
carbon source
L-Rhamnose (C)
-0.0
+0.2
+0.3
+0.3
-0.4
carbon source
Pullulan (C)
+0.1
+0.2
+0.0
+0.3
-0.3
carbon source
Pullulan (C)
-0.2
+0.2
+0.0
-0.1
+0.6
motility_chemotaxis
R2A motility; outer cut
+0.1
-0.1
+0.2
+0.4
-0.2
stress
potassium fluoride stress 30 mM
-0.4
+0.7
+0.2
-0.0
-0.0
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.8
+0.3
+0.2
+0.6
+0.5
temperature
R2A 15C; 72 hours
+0.7
+0.1
+0.2
+0.0
-0.1
carbon source
Melibiose (C)
-0.2
-0.0
+0.2
-0.1
+0.9
carbon source
Starch (C)
+0.0
+0.4
+0.1
+0.3
+0.2
stress
potassium fluoride stress 30 mM
-0.1
+0.8
+0.4
-0.2
+0.0
temperature
R2A 15C; 144 hours
+0.4
+0.4
+0.2
+0.0
+0.3
temperature
R2A 30C; 144 hours
-0.1
+0.2
+0.5
+0.5
+0.3
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