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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS03815 and ABZR88_RS03820 are separated by 262 nucleotides
ABZR88_RS03820 and ABZR88_RS03825 are separated by 196 nucleotides
ABZR88_RS03825 and ABZR88_RS03830 are separated by 96 nucleotides
ABZR88_RS03830 and ABZR88_RS03835 are separated by 81 nucleotides
ABZR88_RS03815: ABZR88_RS03815 - ATP-binding protein, at 906,542 to 908,347
_RS03815
ABZR88_RS03820: ABZR88_RS03820 - DUF4142 domain-containing protein, at 908,610 to 909,227
_RS03820
ABZR88_RS03825: ABZR88_RS03825 - chitinase, at 909,424 to 910,422
_RS03825
ABZR88_RS03830: ABZR88_RS03830 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 910,519 to 911,067
_RS03830
ABZR88_RS03835: ABZR88_RS03835 - DUF2795 domain-containing protein, at 911,149 to 911,370
_RS03835
Group
Condition
ABZR88
_RS03815
ABZR88
_RS03820
ABZR88
_RS03825
ABZR88
_RS03830
ABZR88
_RS03835
no stress control
R2A no stress control
-0.4
-1.2
-0.2
N.D.
N.D.
stress
R2A_high_K2HPO4
+0.0
-0.2
-0.4
N.D.
N.D.
motility_chemotaxis
R2A motility; outer cut
-0.1
-0.1
-0.4
N.D.
N.D.
stress
Kanamycin sulfate stress 0.05 mg/ml
+0.0
-0.1
-0.6
N.D.
N.D.
stress
R2A with Apigenin 50 ug/ml
-0.1
-0.5
-0.1
N.D.
N.D.
temperature
R2A 15C; 72 hours
-0.1
-0.0
-0.4
N.D.
N.D.
motility_chemotaxis
R2A motility; outer cut
-0.1
-0.3
-0.1
N.D.
N.D.
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.1
-0.4
-0.1
N.D.
N.D.
stress
R2A_low_K2HPO4
-0.2
+0.0
-0.4
N.D.
N.D.
temperature
R2A 15C; 144 hours
-0.1
-0.2
-0.2
N.D.
N.D.
temperature
R2A 15C; 144 hours
+0.0
-0.3
-0.3
N.D.
N.D.
carbon source
alginate (C)
-0.1
+0.1
-0.4
N.D.
N.D.
carbon source
Pullulan (C)
-0.0
+0.1
-0.5
N.D.
N.D.
stress
copper (II) chloride stress 1 mM
-0.0
+0.1
-0.4
N.D.
N.D.
carbon source
Pullulan (C)
-0.0
+0.2
-0.5
N.D.
N.D.
carbon source
Pullulan (C)
-0.0
+0.1
-0.4
N.D.
N.D.
carbon source
Melibiose (C)
-0.2
+0.1
-0.3
N.D.
N.D.
carbon source
D-Maltose (C)
-0.2
+0.3
-0.4
N.D.
N.D.
carbon source
Beta-Lactose (C)
-0.1
+0.2
-0.3
N.D.
N.D.
stress
copper (II) chloride stress 1 mM
+0.0
+0.3
-0.4
N.D.
N.D.
carbon source
Melibiose (C)
-0.2
+0.4
-0.2
N.D.
N.D.
carbon source
Starch (C)
-0.1
+0.5
-0.4
N.D.
N.D.
carbon source
Starch (C)
+0.2
+0.1
-0.3
N.D.
N.D.
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
-0.0
+0.3
-0.2
N.D.
N.D.
carbon source
L-Rhamnose (C)
+0.1
-0.5
+0.6
N.D.
N.D.
stress
Erythromycin stress 0.05 mg/ml
-0.1
+0.3
+0.1
N.D.
N.D.
carbon source
D-Maltose (C)
-0.1
+0.5
-0.0
N.D.
N.D.
stress
potassium fluoride stress 30 mM
-0.1
+0.4
+0.4
N.D.
N.D.
carbon source
L-Rhamnose (C)
-0.1
+0.3
+0.7
N.D.
N.D.
stress
potassium fluoride stress 30 mM
-0.0
+0.7
+0.7
N.D.
N.D.
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