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Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS03165 and ABZR88_RS03170 are separated by 132 nucleotides
ABZR88_RS03170 and ABZR88_RS03175 are separated by 0 nucleotides
ABZR88_RS03175 and ABZR88_RS03180 overlap by 4 nucleotides
ABZR88_RS03180 and ABZR88_RS03185 are separated by 257 nucleotides
ABZR88_RS03165: ABZR88_RS03165 - hypothetical protein, at 763,891 to 764,088
_RS03165
ABZR88_RS03170: ABZR88_RS03170 - glycoside hydrolase family 88 protein, at 764,221 to 765,426
_RS03170
ABZR88_RS03175: ABZR88_RS03175 - family 43 glycosylhydrolase, at 765,427 to 766,377
_RS03175
ABZR88_RS03180: ABZR88_RS03180 - DUF2264 domain-containing protein, at 766,374 to 767,606
_RS03180
ABZR88_RS03185: ABZR88_RS03185 - efflux RND transporter periplasmic adaptor subunit, at 767,864 to 768,952
_RS03185
Group
Condition
ABZR88
_RS03165
ABZR88
_RS03170
ABZR88
_RS03175
ABZR88
_RS03180
ABZR88
_RS03185
carbon source
D-Glucose (C)
-1.6
-0.0
+0.0
-0.0
+0.0
carbon source
L-Rhamnose (C)
-1.3
+0.1
-0.3
+0.0
-0.1
motility_chemotaxis
R2A motility; outer cut
-1.8
+0.0
+0.2
+0.4
-0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.9
+0.0
-0.2
-0.0
-0.2
stress
Erythromycin stress 0.05 mg/ml
-1.0
+0.2
-0.1
-0.1
-0.2
no stress control
R2A no stress control
+0.2
-0.0
-0.2
-0.1
-1.1
carbon source
alginate (C)
-1.1
-0.1
+0.1
+0.1
-0.2
stress
NaCl stress 100 mM
-0.7
-0.1
-0.1
-0.0
-0.1
temperature
R2A 30C; 144 hours
-0.1
-0.0
-0.4
-0.1
-0.2
carbon source
L-Arabinose (C)
-0.7
+0.0
-0.0
+0.1
-0.1
carbon source
L-Rhamnose (C)
-0.4
+0.0
-0.1
-0.1
-0.1
motility_chemotaxis
R2A motility; outer cut
-0.8
+0.3
-0.2
+0.0
-0.0
temperature
R2A 15C; 72 hours
-0.1
+0.2
-0.4
-0.0
-0.3
stress
R2A_high_K2HPO4
-0.7
+0.1
+0.0
+0.1
-0.1
motility_chemotaxis
R2A motility; outer cut
+0.3
+0.1
-0.1
+0.0
-0.6
carbon source
Beta-Lactose (C)
-0.4
+0.1
+0.1
+0.1
-0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.7
+0.3
-0.2
-0.3
-0.6
carbon source
Melibiose (C)
+0.1
-0.0
-0.1
-0.3
+0.4
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.2
+0.1
+0.2
-0.0
-0.4
carbon source
Starch (C)
-0.0
+0.1
+0.4
+0.1
-0.3
motility_chemotaxis
R2A motility; outer cut
+0.6
+0.0
-0.2
-0.0
-0.1
carbon source
D-Fructose (C)
+0.6
-0.1
-0.1
-0.0
-0.1
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days
+0.2
+0.2
-0.2
-0.0
+0.1
stress
Kanamycin sulfate stress 0.05 mg/ml
+0.6
-0.0
+0.0
+0.0
-0.3
carbon source
alginate (C)
+0.6
-0.0
-0.1
+0.1
-0.0
stress
R2A with Apigenin 50 ug/ml
+0.6
+0.1
-0.0
-0.2
-0.1
carbon source
Melibiose (C)
+0.9
-0.1
-0.1
-0.2
+0.1
stress
Esculin Monohydrate stress 5 mM
+0.4
+0.1
+0.1
+0.2
-0.1
stress
Trimethoprim stress 0.05 mg/ml
+0.6
+0.1
+0.0
-0.1
+0.3
carbon source
Starch (C)
+0.5
-0.0
+0.3
+0.1
+0.2
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