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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS03045 and ABZR88_RS03050 are separated by 25 nucleotides
ABZR88_RS03050 and ABZR88_RS03055 are separated by 670 nucleotides
ABZR88_RS03055 and ABZR88_RS03060 are separated by 120 nucleotides
ABZR88_RS03060 and ABZR88_RS03065 are separated by 57 nucleotides
ABZR88_RS03045: ABZR88_RS03045 - efflux RND transporter periplasmic adaptor subunit, at 725,973 to 727,142
_RS03045
ABZR88_RS03050: ABZR88_RS03050 - efflux RND transporter permease subunit, at 727,168 to 730,335
_RS03050
ABZR88_RS03055: ABZR88_RS03055 - hypothetical protein, at 731,006 to 731,533
_RS03055
ABZR88_RS03060: ABZR88_RS03060 - hypothetical protein, at 731,654 to 732,175
_RS03060
ABZR88_RS03065: ABZR88_RS03065 - RluA family pseudouridine synthase, at 732,233 to 732,958
_RS03065
Group
Condition
ABZR88
_RS03045
ABZR88
_RS03050
ABZR88
_RS03055
ABZR88
_RS03060
ABZR88
_RS03065
no stress control
R2A no stress control
-0.1
-0.2
-1.1
-0.5
-0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.0
-0.0
-0.4
-0.0
-1.4
temperature
R2A 15C; 144 hours
-0.2
+0.0
+0.2
-0.4
-1.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.0
-0.2
-0.2
-0.2
-1.1
temperature
R2A 15C; 72 hours
-0.0
+0.1
+0.1
-0.4
-1.1
temperature
R2A 30C; 144 hours
-0.2
-0.0
-0.2
-0.5
-0.4
stress
copper (II) chloride stress 1 mM
+0.0
-0.1
-0.1
-0.1
-1.0
temperature
R2A 15C; 144 hours
-0.2
-0.0
+0.1
-0.1
-1.0
temperature
R2A 15C; 72 hours
-0.0
+0.1
+0.1
-0.2
-1.1
stress
copper (II) chloride stress 1 mM
+0.1
-0.0
-0.2
-0.2
-0.7
motility_chemotaxis
R2A motility; outer cut
+0.4
+0.1
-0.2
-0.7
-0.6
carbon source
L-Rhamnose (C)
-0.1
+0.1
-0.5
-0.2
-0.4
carbon source
Melibiose (C)
-0.2
+0.1
-0.3
+0.2
-0.7
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.2
-0.0
+0.0
-0.2
-0.9
carbon source
alginate (C)
-0.1
+0.1
-0.3
-0.5
-0.1
carbon source
D-Xylose (C)
-0.0
+0.1
-0.2
-0.3
-0.4
carbon source
Melibiose (C)
-0.2
-0.0
+0.3
-0.4
-0.6
stress
Esculin Monohydrate stress 5 mM
+0.0
+0.1
-0.3
-0.0
-0.6
carbon source
L-Arabinose (C)
+0.0
-0.0
+0.0
+0.3
-1.1
carbon source
Pullulan (C)
-0.1
-0.0
+0.1
+0.5
-1.2
temperature
R2A 30C
+0.1
+0.1
+0.0
-0.2
-0.6
carbon source
L-Arabinose (C)
+0.1
+0.0
+0.4
+0.3
-1.4
carbon source
Pullulan (C)
+0.1
+0.1
+0.5
-0.0
-1.0
motility_chemotaxis
R2A motility; outer cut
-0.1
+0.0
+0.3
-0.6
+0.1
stress
R2A_low_K2HPO4
+0.1
+0.1
-0.2
+0.3
-0.4
carbon source
Starch (C)
+0.1
+0.0
+0.1
+0.3
-0.5
carbon source
Pullulan (C)
+0.1
+0.1
+0.4
+0.1
-0.5
carbon source
Beta-Lactose (C)
+0.0
+0.1
+0.1
+0.3
-0.5
carbon source
Beta-Lactose (C)
+0.1
+0.0
+0.4
+0.2
-0.4
stress
Trimethoprim stress 0.05 mg/ml
-0.0
+0.1
+0.2
+0.5
-0.2
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