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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS02540 and ABZR88_RS02545 are separated by 10 nucleotides
ABZR88_RS02545 and ABZR88_RS02550 are separated by 12 nucleotides
ABZR88_RS02550 and ABZR88_RS02555 are separated by 876 nucleotides
ABZR88_RS02555 and ABZR88_RS02560 are separated by 23 nucleotides
ABZR88_RS02540: ABZR88_RS02540 - hypothetical protein, at 579,492 to 579,971
_RS02540
ABZR88_RS02545: ABZR88_RS02545 - hypothetical protein, at 579,982 to 585,303
_RS02545
ABZR88_RS02550: ABZR88_RS02550 - RHS repeat domain-containing protein, at 585,316 to 589,638
_RS02550
ABZR88_RS02555: ABZR88_RS02555 - hypothetical protein, at 590,515 to 590,697
_RS02555
ABZR88_RS02560: ABZR88_RS02560 - type IV pilin protein, at 590,721 to 591,146
_RS02560
Group
Condition
ABZR88
_RS02540
ABZR88
_RS02545
ABZR88
_RS02550
ABZR88
_RS02555
ABZR88
_RS02560
stress
Erythromycin stress 0.05 mg/ml
-0.8
-0.2
-0.0
-0.1
+0.0
stress
Erythromycin stress 0.05 mg/ml
-0.7
-0.2
+0.1
+0.1
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.9
-0.1
+0.0
+0.2
-0.1
stress
potassium fluoride stress 30 mM
-0.6
-0.1
+0.1
-0.1
-0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.7
-0.0
+0.0
+0.3
-0.1
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
-0.7
-0.1
+0.0
+0.2
+0.1
stress
copper (II) chloride stress 1 mM
-0.5
-0.1
+0.0
+0.1
+0.2
temperature
R2A 30C
-0.2
-0.1
+0.0
+0.2
-0.3
carbon source
Pullulan (C)
-0.6
+0.0
+0.1
+0.4
-0.1
motility_chemotaxis
R2A motility; outer cut
-0.3
-0.0
+0.1
+0.2
+0.3
motility_chemotaxis
R2A motility; outer cut
-0.1
+0.1
+0.1
-0.3
+0.5
temperature
R2A 30C
-0.3
+0.0
+0.1
+0.2
+0.3
carbon source
Pullulan (C)
-0.3
-0.0
+0.1
+0.4
+0.1
carbon source
L-Rhamnose (C)
+0.4
+0.0
+0.1
-0.1
-0.1
temperature
R2A 30C; 144 hours
-0.3
+0.1
+0.2
+0.4
+0.1
carbon source
Pullulan (C)
-0.3
-0.0
+0.1
+0.3
+0.4
motility_chemotaxis
R2A motility; outer cut
-0.6
-0.0
+0.1
+1.2
-0.1
stress
Trimethoprim stress 0.05 mg/ml
+0.4
-0.1
+0.0
-0.1
+0.3
no stress control
R2A no stress control
-0.4
+0.1
+0.1
+0.2
+0.6
stress
R2A with Apigenin 50 ug/ml
-0.3
+0.0
+0.0
+0.3
+0.5
carbon source
Beta-Lactose (C)
-0.1
+0.0
+0.0
+0.3
+0.4
carbon source
Pullulan (C)
-0.1
+0.1
+0.1
+0.3
+0.3
carbon source
L-Rhamnose (C)
+0.3
+0.1
+0.0
-0.0
+0.4
carbon source
Beta-Lactose (C)
-0.0
-0.0
+0.1
+0.4
+0.5
carbon source
D-Xylose (C)
+0.3
+0.0
+0.2
+0.2
+0.0
carbon source
Starch (C)
-0.1
-0.0
+0.1
+0.4
+0.6
carbon source
D-Maltose (C)
-0.0
+0.0
+0.0
+0.4
+0.5
carbon source
alginate (C)
+0.1
+0.1
+0.0
+0.3
+0.5
temperature
R2A 15C; 72 hours
+0.4
-0.0
+0.1
+0.2
+0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.5
+0.0
+0.2
+0.2
+0.1
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ABZR88_RS02550
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