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Cofit
Protein
Homologs
Fitness for 5 genes in
Mucilaginibacter yixingensis YX-36 DSM 26809
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR88_RS02515 and ABZR88_RS02520 are separated by 9 nucleotides
ABZR88_RS02520 and ABZR88_RS02525 are separated by 311 nucleotides
ABZR88_RS02525 and ABZR88_RS02530 are separated by 650 nucleotides
ABZR88_RS02530 and ABZR88_RS02535 are separated by 126 nucleotides
ABZR88_RS02515: ABZR88_RS02515 - hypothetical protein, at 573,565 to 574,083
_RS02515
ABZR88_RS02520: ABZR88_RS02520 - hypothetical protein, at 574,093 to 575,052
_RS02520
ABZR88_RS02525: ABZR88_RS02525 - hypothetical protein, at 575,364 to 576,815
_RS02525
ABZR88_RS02530: ABZR88_RS02530 - hypothetical protein, at 577,466 to 578,722
_RS02530
ABZR88_RS02535: ABZR88_RS02535 - OmpH family outer membrane protein, at 578,849 to 579,412
_RS02535
Group
Condition
ABZR88
_RS02515
ABZR88
_RS02520
ABZR88
_RS02525
ABZR88
_RS02530
ABZR88
_RS02535
no stress control
R2A no stress control
-0.4
+0.1
+0.1
-0.5
-0.2
motility_chemotaxis
R2A motility; outer cut
-0.4
-0.2
+0.3
+0.0
-0.2
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.3
-0.2
-0.2
-0.1
-0.1
carbon source
Beta-Lactose (C)
-0.2
-0.1
+0.0
-0.1
+0.2
carbon source
Beta-Lactose (C)
-0.4
+0.0
+0.0
+0.1
+0.1
stress
potassium fluoride stress 30 mM
-0.2
-0.1
+0.1
+0.1
+0.0
carbon source
Starch (C)
-0.3
+0.1
+0.1
-0.0
+0.1
carbon source
Pullulan (C)
-0.0
-0.1
+0.1
-0.1
+0.2
stress
Kanamycin sulfate stress 0.05 mg/ml
+0.1
+0.1
-0.1
-0.2
+0.1
carbon source
D-Xylose (C)
-0.3
+0.2
+0.0
+0.1
+0.0
stress
R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
+0.3
+0.2
+0.0
-0.2
-0.3
carbon source
L-Arabinose (C)
+0.2
-0.1
-0.1
+0.1
+0.0
temperature
R2A 21C
+0.1
+0.1
-0.1
+0.2
-0.1
carbon source
L-Rhamnose (C)
+0.3
-0.1
+0.0
-0.1
+0.1
temperature
R2A 15C; 144 hours
+0.2
+0.2
-0.2
+0.1
+0.0
carbon source
L-Rhamnose (C)
+0.2
+0.1
-0.1
-0.1
+0.2
carbon source
Pullulan (C)
-0.2
+0.3
+0.1
+0.1
+0.0
motility_chemotaxis
R2A motility; outer cut
+0.2
+0.0
-0.2
+0.2
+0.2
carbon source
Melibiose (C)
+0.4
+0.0
-0.1
-0.1
+0.1
carbon source
D-Glucose (C)
+0.4
+0.0
+0.0
-0.1
+0.1
temperature
R2A 15C; 72 hours
+0.1
+0.2
-0.0
-0.0
+0.2
stress
R2A with Apigenin 50 ug/ml
-0.0
+0.3
+0.0
+0.1
+0.2
motility_chemotaxis
R2A motility; outer cut
+0.3
+0.3
-0.1
+0.0
-0.0
temperature
R2A 30C; 144 hours
-0.2
+0.5
+0.0
+0.0
+0.1
carbon source
alginate (C)
+0.3
+0.3
+0.1
-0.0
-0.0
temperature
R2A 15C; 144 hours
+0.2
+0.3
-0.1
+0.1
+0.2
temperature
R2A 15C; 72 hours
+0.4
+0.3
+0.1
-0.1
+0.1
carbon source
Melibiose (C)
+0.4
+0.0
+0.1
+0.0
+0.2
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A; Time=7_days
+0.3
+0.3
+0.0
-0.0
+0.3
in planta
Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=7_days
+0.2
+0.2
+0.1
+0.2
+0.3
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