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Cofit
Fitness for 5 genes in
Bosea sp. OAE506
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE41_RS22380 and ABIE41_RS22385 are separated by 178 nucleotides
ABIE41_RS22385 and ABIE41_RS22390 are separated by 269 nucleotides
ABIE41_RS22390 and ABIE41_RS22395 are separated by 154 nucleotides
ABIE41_RS22395 and ABIE41_RS22400 are separated by 278 nucleotides
ABIE41_RS22380: ABIE41_RS22380 - DEAD/DEAH box helicase, at 4,606,353 to 4,607,789
_RS22380
ABIE41_RS22385: ABIE41_RS22385 - cold-shock protein, at 4,607,968 to 4,608,177
_RS22385
ABIE41_RS22390: ABIE41_RS22390 - pyruvate, phosphate dikinase, at 4,608,447 to 4,611,132
_RS22390
ABIE41_RS22395: ABIE41_RS22395 - YcgN family cysteine cluster protein, at 4,611,287 to 4,611,781
_RS22395
ABIE41_RS22400: ABIE41_RS22400 - PBP1A family penicillin-binding protein, at 4,612,060 to 4,614,285
_RS22400
Group
Condition
ABIE41
_RS22380
ABIE41
_RS22385
ABIE41
_RS22390
ABIE41
_RS22395
ABIE41
_RS22400
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.4
N.D.
-2.1
+0.1
-3.5
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.1
N.D.
-2.1
-0.1
-3.1
stress
R2A with 2-pentyl-furan 21.3684 mM
+0.2
N.D.
-1.7
-0.1
-2.8
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.0
N.D.
-1.0
+0.2
-3.0
carbon source
L-Proline (C)
-0.5
N.D.
-2.7
-0.3
+0.3
carbon source
L-Fucose (C)
-0.6
N.D.
-2.7
+0.4
+0.5
carbon source
L-Histidine (C)
-0.3
N.D.
-2.2
+0.2
+0.0
carbon source
Xylitol (C)
-0.1
N.D.
-2.2
-0.2
+0.3
carbon source
Fumarate (C)
-0.2
N.D.
-2.1
+0.1
+0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.1
N.D.
-1.9
-0.5
+0.4
carbon source
D-Alanine (C)
-0.5
N.D.
-1.6
+0.2
-0.1
carbon source
L-Fucose (C)
-0.3
N.D.
-1.9
-0.1
+0.3
stress
R2A with 1-octen-3-ol 0.542729333333333 mM
-0.4
N.D.
-0.9
+0.2
-0.8
carbon source
L-Arabinose (C)
-0.5
N.D.
-2.4
+0.5
+0.5
carbon source
L-Glutamic (C)
-0.1
N.D.
-1.6
-0.3
+0.3
carbon source
D-Mannitol (C)
+0.2
N.D.
-1.4
-0.7
+0.3
carbon source
NAG (C)
-0.2
N.D.
-1.6
-0.3
+0.6
carbon source
L-Glutamic (C)
-0.2
N.D.
-1.7
+0.6
+0.1
carbon source
D-Glucose-6-Phosphate (C)
-0.8
N.D.
-0.9
+0.5
-0.0
carbon source
D-Xylose (C)
+0.4
N.D.
-1.8
-0.1
+0.4
carbon source
Ying_AminoAcid20 rep C; time point 2
+0.1
N.D.
-2.0
+0.8
+0.0
carbon source
L-Proline (C)
-0.4
N.D.
-1.7
+0.8
+0.3
carbon source
D-Glucosamine Hydrochloride (C)
+0.1
N.D.
-1.7
+0.2
+0.5
carbon source
Ying_AminoAcid20 rep A; time point 3
+0.3
N.D.
-1.5
-0.0
+0.4
carbon source
succinate (C)
+0.1
N.D.
-1.6
+0.1
+0.7
carbon source
Ying_AminoAcid20 rep A; time point 2
+0.2
N.D.
-1.6
+0.8
-0.0
carbon source
Xylitol (C)
+0.1
N.D.
-1.5
+0.5
+0.3
carbon source
D,L-Lactate (C)
+0.0
N.D.
-1.3
+0.6
+0.4
carbon source
L-Rhamnose (C)
+0.4
N.D.
-1.2
+0.1
+0.5
carbon source
L-Malic (C)
+0.2
N.D.
-0.8
+0.4
+0.9
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