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Cofit
Fitness for 5 genes in
Bosea sp. OAE506
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE41_RS18550 and ABIE41_RS18555 are separated by 12 nucleotides
ABIE41_RS18555 and ABIE41_RS18560 are separated by 194 nucleotides
ABIE41_RS18560 and ABIE41_RS18565 are separated by 60 nucleotides
ABIE41_RS18565 and ABIE41_RS18570 are separated by 10 nucleotides
ABIE41_RS18550: ABIE41_RS18550 - GntR family transcriptional regulator, at 3,818,860 to 3,819,579
_RS18550
ABIE41_RS18555: ABIE41_RS18555 - hypothetical protein, at 3,819,592 to 3,819,804
_RS18555
ABIE41_RS18560: ABIE41_RS18560 - phosphoketolase family protein, at 3,819,999 to 3,822,373
_RS18560
ABIE41_RS18565: ABIE41_RS18565 - phospholipase D-like domain-containing protein, at 3,822,434 to 3,823,855
_RS18565
ABIE41_RS18570: ABIE41_RS18570 - endonuclease/exonuclease/phosphatase family protein, at 3,823,866 to 3,824,588
_RS18570
Group
Condition
ABIE41
_RS18550
ABIE41
_RS18555
ABIE41
_RS18560
ABIE41
_RS18565
ABIE41
_RS18570
carbon source
D-Glucosamine Hydrochloride (C)
-0.4
-4.4
+0.1
-0.0
-0.3
carbon source
D-Tagatose (C)
-0.5
-2.1
-0.1
-0.1
-0.6
stress
R2A with 3-octanone 5.3129 mM
-0.1
-2.3
-0.1
-0.7
+0.1
carbon source
D,L-Lactate (C)
-0.4
-3.4
+0.0
+0.9
+0.5
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
-0.0
-2.1
-0.0
-0.3
+0.1
carbon source
D-Alanine (C)
-0.2
-2.0
-0.1
+0.1
-0.1
carbon source
D-Glucuronic Acid (C)
-0.5
-1.8
-0.1
+0.2
-0.0
carbon source
L-Proline (C)
-0.2
-1.7
+0.2
-0.3
-0.1
stress
R2A with 1-octen-3-ol 0.603032666666667 mM
-0.2
-1.9
+0.1
-0.3
+0.1
carbon source
a-Cyclodextrin (C)
-0.2
-1.5
+0.2
+0.3
-0.9
carbon source
L-Arabinose (C)
-0.1
-1.8
+0.3
-0.2
-0.0
stress
R2A with 3-octanone 5.31033333333333 mM
-0.5
-0.5
-0.1
-0.9
+0.1
carbon source
D-Fructose (C)
-0.3
-1.8
+0.1
+0.4
-0.0
stress
R2A with 1-octen-3-ol 0.542729333333333 mM
-0.2
-0.9
+0.1
-0.6
-0.1
carbon source
Fumarate (C)
-0.3
-1.1
+0.1
-0.0
-0.3
carbon source
D-Mannitol (C)
-0.3
-1.3
+0.1
-0.2
+0.2
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.4
-1.5
+0.2
+1.1
-0.8
carbon source
Fumarate (C)
-0.5
-1.4
+0.2
+0.3
+0.1
carbon source
D-Ribose (C)
-0.2
-1.8
+0.3
+0.3
+0.0
carbon source
L-Glutamic (C)
-0.5
-0.6
+0.2
-0.3
-0.2
carbon source
D-Galactose (C)
-0.3
-1.1
+0.1
+0.3
-0.4
carbon source
succinate (C)
-0.3
-1.6
+0.3
+0.4
-0.1
carbon source
D-Gluconic Acid (C)
-0.1
-1.7
-0.0
+0.7
-0.1
carbon source
L-Rhamnose (C)
-0.3
-1.0
+0.2
+0.2
-0.2
carbon source
D-Galactose (C)
-0.4
-1.0
+0.1
+0.5
-0.1
carbon source
NAG (C)
-0.5
-1.0
+0.3
+0.0
+0.2
carbon source
pyruvate (C)
-0.2
-0.8
+0.1
+0.7
-0.1
carbon source
Ying_AminoAcid20 rep B; time point 2
-0.2
+1.2
-0.1
-0.2
-0.4
stress
R2A with 2-pentyl-furan 21.3684 mM
-0.1
+0.1
+0.0
+1.0
-0.8
carbon source
Ying_AminoAcid20 rep A; time point 2
-0.2
+1.2
+0.0
-0.2
+0.2
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