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Cofit
Fitness for 5 genes in
Bosea sp. OAE506
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500 nt
ABIE41_RS18025 and ABIE41_RS18030 overlap by 58 nucleotides
ABIE41_RS18030 and ABIE41_RS18035 are separated by 157 nucleotides
ABIE41_RS18035 and ABIE41_RS18040 are separated by 190 nucleotides
ABIE41_RS18040 and ABIE41_RS18045 are separated by 10 nucleotides
ABIE41_RS18025: ABIE41_RS18025 - amidohydrolase, at 3,713,549 to 3,714,403
_RS18025
ABIE41_RS18030: ABIE41_RS18030 - hypothetical protein, at 3,714,346 to 3,714,744
_RS18030
ABIE41_RS18035: ABIE41_RS18035 - tRNA-Asp, at 3,714,902 to 3,714,978
_RS18035
ABIE41_RS18040: ABIE41_RS18040 - tRNA-Val, at 3,715,169 to 3,715,244
_RS18040
ABIE41_RS18045: ABIE41_RS18045 - methyl-accepting chemotaxis protein, at 3,715,255 to 3,717,060
_RS18045
Group
Condition
ABIE41
_RS18025
ABIE41
_RS18030
ABIE41
_RS18035
ABIE41
_RS18040
ABIE41
_RS18045
stress
R2A with 2-pentyl-furan 21.3684 mM
N.D.
+0.4
N.D.
-3.1
+0.1
carbon source
pyruvate (C)
N.D.
-0.6
N.D.
-1.0
-0.8
carbon source
Ying_all64 rep C; time point 3
N.D.
-0.1
N.D.
-1.7
-0.2
carbon source
L-Proline (C)
N.D.
-0.4
N.D.
-1.4
+0.0
carbon source
D-Ribose (C)
N.D.
-0.1
N.D.
-1.0
-0.6
carbon source
D-Mannose (C)
N.D.
-0.1
N.D.
-1.5
-0.1
carbon source
Ying_AminoAcid20 rep A; time point 3
N.D.
-0.1
N.D.
-1.9
+0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
N.D.
+0.1
N.D.
-1.6
-0.2
carbon source
Ying_all64 rep B; time point 2
N.D.
+0.3
N.D.
-1.7
-0.0
r2a no stress control
R2A no stress control
N.D.
+0.2
N.D.
-1.7
+0.0
carbon source
Ying_all64 rep C; time point 2
N.D.
-0.1
N.D.
-1.4
+0.2
stress
R2A with 2-pentyl-furan 21.3684 mM
N.D.
+0.0
N.D.
-1.7
+0.3
stress
R2A with 1-octen-3-ol 0.603032666666667 mM
N.D.
+0.6
N.D.
-2.1
+0.3
carbon source
D-Fructose (C)
N.D.
+0.1
N.D.
-1.4
+0.3
carbon source
casaminos (C)
N.D.
+0.5
N.D.
-0.9
-0.6
carbon source
pyruvate (C)
N.D.
+0.4
N.D.
-0.7
-0.6
stress
R2A with 1-octen-3-ol 0.603032666666667 mM
N.D.
+0.2
N.D.
-1.3
+0.3
stress
R2A with 1-octen-3-ol 0.493390333333333 mM
N.D.
+0.4
N.D.
-1.2
+0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
N.D.
+0.2
N.D.
-1.1
+0.3
stress
R2A with 3-octanone 5.31033333333333 mM
N.D.
+0.5
N.D.
-1.2
+0.1
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
N.D.
+0.4
N.D.
-1.1
+0.1
carbon source
Ying_all64 rep C; time point 1
N.D.
-0.4
N.D.
-0.7
+0.6
stress
R2A with 2-pentyl-furan 21.3684 mM
N.D.
+0.7
N.D.
-1.4
+0.1
r2a no stress control
R2A no stress control
N.D.
+0.5
N.D.
-1.2
+0.3
stress
R2A with 3-octanone 2.65516666666667 mM
N.D.
+0.3
N.D.
-1.0
+0.3
stress
R2A with 1-octen-3-ol 0.493390333333333 mM
N.D.
+0.5
N.D.
-1.1
+0.2
r2a no stress control
R2A no stress control
N.D.
+0.3
N.D.
-1.2
+0.6
carbon source
D-Raffinose (C)
N.D.
-0.3
N.D.
+0.7
-0.6
stress
R2A with 1-octen-3-ol 0.542729333333333 mM
N.D.
+0.6
N.D.
-0.7
+0.6
carbon source
succinate (C)
N.D.
+0.4
N.D.
+1.2
-0.2
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