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Cofit
Fitness for 5 genes in
Bosea sp. OAE506
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE41_RS13680 and ABIE41_RS13685 overlap by 8 nucleotides
ABIE41_RS13685 and ABIE41_RS13690 are separated by 200 nucleotides
ABIE41_RS13690 and ABIE41_RS13695 are separated by 56 nucleotides
ABIE41_RS13695 and ABIE41_RS13700 are separated by 308 nucleotides
ABIE41_RS13680: ABIE41_RS13680 - aconitase X catalytic domain-containing protein, at 2,807,209 to 2,808,462
_RS13680
ABIE41_RS13685: ABIE41_RS13685 - 3-carboxy-cis,cis-muconate cycloisomerase, at 2,808,455 to 2,809,861
_RS13685
ABIE41_RS13690: ABIE41_RS13690 - carbon monoxide dehydrogenase subunit G, at 2,810,062 to 2,810,487
_RS13690
ABIE41_RS13695: ABIE41_RS13695 - methyl-accepting chemotaxis protein, at 2,810,544 to 2,811,902
_RS13695
ABIE41_RS13700: ABIE41_RS13700 - (2Fe-2S)-binding protein, at 2,812,211 to 2,812,723
_RS13700
Group
Condition
ABIE41
_RS13680
ABIE41
_RS13685
ABIE41
_RS13690
ABIE41
_RS13695
ABIE41
_RS13700
carbon source
L-Arabinose (C)
+0.1
-0.3
-0.4
-0.6
-4.3
carbon source
D-Lactate (C)
-0.5
-0.5
+0.1
+0.1
-4.6
carbon source
L-Rhamnose (C)
+0.2
-0.0
+0.1
+0.2
-4.6
carbon source
D,L-Lactate (C)
-0.3
+0.3
-0.2
+0.7
-4.4
carbon source
m-Inositol (C)
-0.6
-0.2
-0.7
+0.1
-2.6
stress
R2A with 3-octanone 2.65516666666667 mM
+0.2
+0.2
-0.1
+0.4
-4.7
stress
R2A with 1-octen-3-ol 0.542729333333333 mM
-0.0
-0.1
+0.2
-0.9
-2.4
stress
R2A with 3-octanone 2.65516666666667 mM
+0.1
-0.0
-0.4
-0.2
-2.4
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
+0.0
-0.0
-0.8
-0.6
-1.5
carbon source
Sucrose (C)
-0.0
-0.0
-0.0
-0.1
-2.6
carbon source
D-Trehalose (C)
-0.0
-0.3
+0.5
+0.3
-3.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
-0.0
-0.1
-0.3
-0.1
-1.8
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.2865 mM
-0.0
-0.1
-0.3
-0.4
-1.4
carbon source
D-Tagatose (C)
-0.5
-0.2
-1.0
+0.3
-0.7
carbon source
casaminos (C)
+0.0
-0.3
-0.4
+0.2
-1.6
carbon source
D-Raffinose (C)
+0.4
+0.4
-0.6
-0.4
-1.8
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
+0.1
+0.0
+0.5
+0.1
-2.5
stress
R2A with 3-octanone 2.65516666666667 mM
+0.2
+0.1
-0.1
-0.0
-1.9
carbon source
D-Xylose (C)
-0.2
+0.0
-0.4
+0.6
-1.8
carbon source
D-Alanine (C)
+0.0
+0.0
-0.4
+0.5
-1.9
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.2709965 mM
+0.0
+0.3
-0.2
-0.1
-1.7
carbon source
D-Tagatose (C)
+0.1
-0.2
-0.2
+0.4
-1.5
stress
R2A with 1-octen-3-ol 0.542729333333333 mM
+0.1
+0.0
+0.4
-0.2
-1.8
carbon source
Fumarate (C)
+0.0
-0.1
-0.4
+0.4
-1.4
carbon source
D-Gluconic Acid (C)
+0.3
-0.1
-0.1
+0.0
-1.7
carbon source
L-Histidine (C)
-0.1
-0.1
+0.4
+0.1
-1.6
stress
R2A with 3-octanone 5.31033333333333 mM
+0.2
+0.3
-0.9
+0.2
-0.7
carbon source
D-Fructose (C)
-0.3
+0.3
-0.6
+0.4
-0.6
stress
R2A with 1-octen-3-ol 0.493390333333333 mM
+0.1
+0.2
+0.3
+0.3
-1.6
stress
R2A with 1-octen-3-ol 0.493390333333333 mM
+0.2
+0.2
+0.3
+0.1
-1.4
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ABIE41_RS13690
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