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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS22100 and ABIE40_RS22105 are separated by 13 nucleotides
ABIE40_RS22105 and ABIE40_RS22110 are separated by 86 nucleotides
ABIE40_RS22110 and ABIE40_RS22115 are separated by 47 nucleotides
ABIE40_RS22115 and ABIE40_RS22120 are separated by 404 nucleotides
ABIE40_RS22100: ABIE40_RS22100 - helix-turn-helix domain-containing protein, at 555,669 to 556,124
_RS22100
ABIE40_RS22105: ABIE40_RS22105 - MarR family transcriptional regulator, at 556,138 to 556,578
_RS22105
ABIE40_RS22110: ABIE40_RS22110 - chloride channel protein, at 556,665 to 558,470
_RS22110
ABIE40_RS22115: ABIE40_RS22115 - ABC-F family ATP-binding cassette domain-containing protein, at 558,518 to 560,050
_RS22115
ABIE40_RS22120: ABIE40_RS22120 - alkylphosphonate utilization protein, at 560,455 to 560,757
_RS22120
Group
Condition
ABIE40
_RS22100
ABIE40
_RS22105
ABIE40
_RS22110
ABIE40
_RS22115
ABIE40
_RS22120
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-2.6
-0.2
-0.1
-0.9
N.D.
carbon source
D-Glucose (C)
-3.1
-0.1
-0.1
-0.1
N.D.
carbon source
Trisodium citrate (C)
-1.8
-0.5
-0.3
-0.5
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
-2.6
-0.4
+0.0
+0.0
N.D.
carbon source
L-Tryptophan (C)
-2.5
+0.3
-0.3
-0.3
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
-1.6
-1.1
+0.0
-0.1
N.D.
carbon source
pyruvate (C)
-2.2
-0.0
-0.0
-0.1
N.D.
carbon source
water (C)
-1.7
-0.1
-0.1
-0.4
N.D.
carbon source
Carnitine Hydrochloride (C)
-2.0
-0.2
+0.1
-0.1
N.D.
carbon source
Gelatin (C)
-1.9
+0.0
-0.2
-0.1
N.D.
r2a no stress control
R2A no stress control
-2.5
+0.6
-0.3
+0.1
N.D.
carbon source
L-Lysine (C)
-2.2
+0.2
+0.1
-0.2
N.D.
carbon source
casaminos (C)
-0.4
-0.5
-0.2
-0.7
N.D.
carbon source
Ethanol (C)
-1.6
-0.4
+0.1
-0.0
N.D.
carbon source
L-Aspartic Acid (C)
-2.0
+0.1
+0.1
+0.1
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
-0.8
-1.2
+0.2
+0.2
N.D.
carbon source
Formate (C)
-2.0
+0.5
+0.2
-0.1
N.D.
carbon source
L-Alanine (C)
-1.6
+0.3
+0.3
-0.4
N.D.
carbon source
D-Glucuronic Acid (C)
-1.6
-0.0
+0.1
+0.4
N.D.
carbon source
D-Trehalose (C)
-1.4
+0.4
+0.0
-0.1
N.D.
carbon source
D-Galactose (C)
-1.3
+0.3
+0.3
-0.0
N.D.
carbon source
a-Cyclodextrin (C)
-0.9
+0.7
+0.1
-0.2
N.D.
stress
R2A with 3-octanone 10.6206 mM
+1.4
-0.8
+0.3
-0.6
N.D.
stress
R2A with 1-octen-3-ol 0.904549 mM
+1.3
-0.0
-0.7
-0.0
N.D.
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
+0.7
-0.7
+0.4
+0.1
N.D.
stress
R2A with 3-octanone 10.6206 mM
+1.5
-1.0
-0.1
+0.1
N.D.
carbon source
casaminos (C)
+1.5
+0.1
+0.4
-0.5
N.D.
stress
R2A with 3-octanone 15.9309 mM
+1.4
+0.1
+0.3
-0.2
N.D.
stress
R2A with 3-octanone 10.6206 mM
+2.2
-0.4
-0.3
+0.1
N.D.
stress
R2A with 3-octanone 10.6206 mM
+1.2
+0.3
+0.3
+0.4
N.D.
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