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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS20220 and ABIE40_RS20225 are separated by 110 nucleotides
ABIE40_RS20225 and ABIE40_RS20230 are separated by 4 nucleotides
ABIE40_RS20230 and ABIE40_RS20235 are separated by 14 nucleotides
ABIE40_RS20235 and ABIE40_RS20240 are separated by 96 nucleotides
ABIE40_RS20220: ABIE40_RS20220 - helix-turn-helix domain-containing protein, at 145,214 to 146,434
_RS20220
ABIE40_RS20225: ABIE40_RS20225 - DUF899 domain-containing protein, at 146,545 to 147,339
_RS20225
ABIE40_RS20230: ABIE40_RS20230 - hypothetical protein, at 147,344 to 147,619
_RS20230
ABIE40_RS20235: ABIE40_RS20235 - YafY family protein, at 147,634 to 148,335
_RS20235
ABIE40_RS20240: ABIE40_RS20240 - VOC family protein, at 148,432 to 148,830
_RS20240
Group
Condition
ABIE40
_RS20220
ABIE40
_RS20225
ABIE40
_RS20230
ABIE40
_RS20235
ABIE40
_RS20240
carbon source
casaminos (C)
+0.5
-0.6
-0.5
-1.0
+0.2
carbon source
L-Threonine (C)
-0.9
-0.2
+0.4
-0.2
-0.1
carbon source
D-Glucose (C)
-0.7
-0.0
+0.3
-0.3
-0.3
carbon source
Formate (C)
+0.4
-0.1
-0.2
-0.1
-0.5
carbon source
D-Lactate (C)
-0.4
+0.0
+0.2
-0.4
+0.2
carbon source
L-Aspartic Acid (C)
-0.4
+0.1
+0.0
-0.4
+0.4
carbon source
succinate (C)
-0.4
+0.1
+0.2
-0.4
+0.3
carbon source
Adenosine (C)
-0.8
+0.1
+0.2
+0.1
+0.2
carbon source
Ethanol (C)
-0.4
-0.0
+0.4
+0.1
-0.3
carbon source
Thymidine (C)
-0.2
+0.2
-0.4
+0.1
+0.3
dmso control
DMSO control
-0.1
+0.1
+0.2
-0.6
+0.5
carbon source
D-Raffinose (C)
-0.2
-0.1
+0.4
+0.2
-0.2
stress
R2A with 1-octen-3-ol 1.3568235 mM
+0.1
-0.2
+0.3
-0.7
+0.6
carbon source
Adenosine (C)
-0.3
-0.1
+0.5
-0.2
+0.3
carbon source
L-Alanine (C)
-0.2
-0.0
+0.6
-0.3
+0.4
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
+0.3
+0.3
+0.3
-0.6
+0.2
carbon source
Adenine (C)
-0.2
-0.0
+0.5
-0.2
+0.3
carbon source
L-Tryptophan (C)
-0.2
+0.1
+0.3
-0.3
+0.5
stress
R2A with 3-octanone 5.3129 mM
+0.1
+0.4
+0.2
-0.4
+0.3
carbon source
Gelatin (C)
-0.3
-0.0
+0.6
-0.0
+0.4
stress
R2A with 3-octanone 5.3129 mM
+0.5
+0.2
+0.3
-0.4
-0.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
+0.3
+0.2
+0.3
-0.3
+0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.6
+0.4
+0.2
-0.5
+0.2
stress
R2A with 1-octen-3-ol 0.904549 mM
+0.2
+0.4
-0.1
+0.0
+0.4
carbon source
L-Arabinose (C)
+0.3
+0.1
+0.5
-0.2
+0.4
stress
R2A with 1-octen-3-ol 1.3568235 mM
-0.0
+0.3
+0.3
+0.4
+0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 1.00268716666667 mM
+0.7
+0.3
+0.3
-0.2
-0.1
stress
R2A with 3-octanone 5.3129 mM
+0.3
+0.2
-0.2
+0.3
+0.5
stress
R2A with 3-octanone 10.6206 mM
+0.5
+0.3
-0.1
+0.2
+0.3
r2a no stress control
R2A no stress control
+0.5
+0.2
+0.4
+0.2
+0.0
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ABIE40_RS20230
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