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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS18620 and ABIE40_RS18625 are separated by 221 nucleotides
ABIE40_RS18625 and ABIE40_RS18630 overlap by 1 nucleotides
ABIE40_RS18630 and ABIE40_RS18635 overlap by 14 nucleotides
ABIE40_RS18635 and ABIE40_RS18640 are separated by 252 nucleotides
ABIE40_RS18620: ABIE40_RS18620 - MDR family MFS transporter, at 3,724,436 to 3,725,971
_RS18620
ABIE40_RS18625: ABIE40_RS18625 - thiamine ABC transporter substrate binding subunit, at 3,726,193 to 3,727,215
_RS18625
ABIE40_RS18630: ABIE40_RS18630 - thiamine/thiamine pyrophosphate ABC transporter permease ThiP, at 3,727,215 to 3,728,852
_RS18630
ABIE40_RS18635: ABIE40_RS18635 - ATP-binding cassette domain-containing protein, at 3,728,839 to 3,729,549
_RS18635
ABIE40_RS18640: ABIE40_RS18640 - M48 family metalloprotease, at 3,729,802 to 3,731,346
_RS18640
Group
Condition
ABIE40
_RS18620
ABIE40
_RS18625
ABIE40
_RS18630
ABIE40
_RS18635
ABIE40
_RS18640
carbon source
casaminos (C)
-0.4
+0.2
+0.3
+0.0
-3.4
carbon source
L-Arabinose (C)
-0.3
-0.1
-0.1
-0.0
-2.5
carbon source
L-Arabinose (C)
-0.1
-0.1
-0.2
-0.2
-2.2
carbon source
L-Aspartic Acid (C)
-0.0
-0.1
-0.0
+0.2
-2.7
carbon source
Ethanol (C)
+0.0
+0.0
-0.1
-0.5
-2.1
carbon source
Carnitine Hydrochloride (C)
+0.0
-0.1
-0.2
-0.1
-2.3
carbon source
Itaconic Acid (C)
+0.1
-0.0
-0.1
-0.3
-2.3
carbon source
a-Cyclodextrin (C)
-0.0
-0.1
-0.0
-0.4
-1.9
carbon source
Formate (C)
+0.0
+0.0
-0.0
-0.6
-1.9
carbon source
Carnitine Hydrochloride (C)
-0.1
-0.1
-0.1
-0.1
-2.1
carbon source
D-Galactose (C)
+0.1
-0.0
+0.1
-0.2
-2.5
carbon source
L-Lysine (C)
+0.1
+0.2
+0.3
+0.4
-3.5
carbon source
Adenine (C)
-0.1
-0.1
-0.1
+0.1
-2.2
carbon source
5-Keto-D-Gluconic Acid potassium salt (C)
+0.0
+0.0
-0.0
-0.1
-2.3
carbon source
Gelatin (C)
-0.2
-0.1
+0.0
-0.2
-1.9
carbon source
Itaconic Acid (C)
-0.0
+0.0
-0.0
-0.4
-1.8
carbon source
Ethanol (C)
-0.1
+0.1
-0.0
-0.3
-1.8
carbon source
L-Citrulline (C)
+0.2
+0.0
-0.3
-0.0
-2.2
carbon source
D-Glucuronic Acid (C)
-0.2
-0.0
+0.1
-0.3
-1.7
carbon source
L-Aspartic Acid (C)
+0.0
+0.0
-0.1
+0.3
-2.4
carbon source
L-Glutamine (C)
+0.0
-0.1
-0.1
+0.2
-2.1
carbon source
L-Alanine (C)
-0.0
+0.0
+0.1
+0.1
-2.3
carbon source
Fumarate (C)
+0.1
-0.0
-0.1
+0.0
-2.1
carbon source
D-Fructose (C)
+0.1
-0.0
+0.2
-0.7
-1.5
carbon source
casaminos (C)
+0.3
+0.4
+0.3
+0.1
-3.0
carbon source
L-Lysine (C)
+0.2
+0.6
+0.7
+0.4
-3.6
dmso control
DMSO control
+0.2
+0.0
-0.0
+0.2
-1.9
r2a no stress control
R2A no stress control
+0.1
-0.2
-0.0
+0.4
-1.7
carbon source
L-Alanine (C)
-0.2
+0.2
+0.2
+0.2
-1.7
carbon source
L-Tryptophan (C)
+0.3
+0.2
+0.1
+0.2
-1.6
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