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Cofit
Protein
Homologs
Fitness for 5 genes in
Rhizobium sp. OAE497
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABIE40_RS15675 and ABIE40_RS15680 are separated by 290 nucleotides
ABIE40_RS15680 and ABIE40_RS15685 are separated by 20 nucleotides
ABIE40_RS15685 and ABIE40_RS15690 are separated by 57 nucleotides
ABIE40_RS15690 and ABIE40_RS15695 are separated by 151 nucleotides
ABIE40_RS15675: ABIE40_RS15675 - sigma-70 family RNA polymerase sigma factor, at 3,109,662 to 3,110,402
_RS15675
ABIE40_RS15680: ABIE40_RS15680 - MBL fold metallo-hydrolase, at 3,110,693 to 3,111,667
_RS15680
ABIE40_RS15685: ABIE40_RS15685 - tetratricopeptide repeat protein, at 3,111,688 to 3,112,173
_RS15685
ABIE40_RS15690: ABIE40_RS15690 - DoxX family protein, at 3,112,231 to 3,112,668
_RS15690
ABIE40_RS15695: ABIE40_RS15695 - invasion associated locus B family protein, at 3,112,820 to 3,113,308
_RS15695
Group
Condition
ABIE40
_RS15675
ABIE40
_RS15680
ABIE40
_RS15685
ABIE40
_RS15690
ABIE40
_RS15695
carbon source
casaminos (C)
+0.3
-0.0
+0.2
-4.3
+0.0
r2a no stress control
R2A no stress control
-0.0
-0.2
+0.2
-2.5
-0.0
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
+0.1
-0.2
+0.2
-2.2
-0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
-0.2
-0.1
+0.1
-1.5
-0.3
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
-0.1
-0.0
+0.2
-1.8
-0.2
carbon source
Ethanol (C)
+0.0
+0.1
+0.2
-2.1
+0.0
carbon source
Gelatin (C)
+0.1
+0.2
-0.1
-1.7
+0.0
carbon source
D-Lactate (C)
-0.6
+0.2
-0.1
-1.1
+0.1
stress
R2A with 1-octen-3-ol 1.08545883333333 mM
+0.2
-0.2
-0.0
-1.3
+0.0
carbon source
D-Glucose-6-Phosphate (C)
+0.2
+0.1
+0.0
-1.3
+0.1
carbon source
Itaconic Acid (C)
+0.1
+0.2
-0.1
-0.8
-0.2
stress
R2A with 3-octanone 5.3129 mM
+0.2
+0.1
+0.1
-0.9
-0.2
stress
R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
+0.2
-0.2
+0.2
-0.8
-0.1
carbon source
D-Glucose-6-Phosphate (C)
+0.2
+0.1
+0.1
-1.0
-0.1
carbon source
D-Fructose (C)
+0.1
+0.1
+0.2
-1.1
-0.0
r2a no stress control
R2A no stress control
+0.1
-0.0
+0.3
-1.1
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
+0.1
+0.2
-0.9
-0.1
carbon source
D-Raffinose (C)
+0.1
+0.2
+0.2
-0.8
+0.0
stress
R2A with 3-octanone 10.6206 mM
+0.3
+0.1
+0.3
-0.8
+0.0
carbon source
L-Methionine (C)
-0.1
+0.1
+0.1
+0.8
-0.2
carbon source
a-Cyclodextrin (C)
+0.0
+0.2
-0.1
+1.1
-0.1
carbon source
Formate (C)
-0.2
+0.2
+0.1
+1.1
+0.0
carbon source
L-Glutamine (C)
+0.1
+0.1
+0.2
+1.0
-0.1
carbon source
pyruvate (C)
-0.1
+0.2
+0.0
+1.1
+0.1
carbon source
Glycolic Acid (C)
+0.1
+0.1
+0.1
+1.1
+0.0
carbon source
Gelatin (C)
-0.1
-0.0
-0.1
+1.5
+0.2
carbon source
Adenine (C)
-0.1
+0.0
+0.2
+1.3
+0.0
carbon source
D-Serine (C)
+0.1
+0.2
+0.2
+1.1
-0.1
carbon source
D-Ribose (C)
+0.1
+0.1
+0.0
+1.5
-0.1
carbon source
a-Cyclodextrin (C)
+0.2
+0.2
+0.1
+1.3
-0.0
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